1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tttaggttggttgaagaagttaagaatagagtaaagacatcagcattttgcatttcatgtatctttcaattgaaatggttaatcttattgtgcatttcagTCATGGGACACAACCTCCATCTCTTTGACGGCTGGCTGCGATCTGTTCATGCGATATGTGACAAGAACTTCCGCTTTAGAATATGAGAACTTTAATTCAG
species | Vitis vinifera |
transcript | Vv09s0002g00390.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCATGATGGAACTGGAGATTGAGCTCAAGAAGGCTTCCGATTCTCTTAAA TCATGGGACACAACCTCCATCTCTTTGACGGCTGGCTGCGATCTGTTCATGEST: gi|351044484|gb|FQ443015.1|FQ443015
genomic: CCATGATGGAACTGGAGATTGAGCTCAAGAAGGCTTCCGATTCTCTTAAAgtgagtgctt ... tgcatttcagTCATGGGACACAACCTCCATCTCTTTGACGGCTGGCTGCGATCTGTTCATG
EST: CCATGATGGAACTGGAGATTGAGCTCAAGAAGGCTTCCGATTCTCTTAAA TCATGGGACACAACCTCCATCTCTTTGACGGCTGGCTGCGATCTGTTCATGEST: gi|349807839|gb|FQ402230.1|FQ402230
genomic: CCATGATGGAACTGGAGATTGAGCTCAAGAAGGCTTCCGATTCTCTTAAAgtgagtgctt ... tgcatttcagTCATGGGACACAACCTCCATCTCTTTGACGGCTGGCTGCGATCTGTTCATG
EST: CCATGATGGAACTGGAGATTGAGCTCAAGAAGGCTTCCGATTCTCTTAAA TCATGGGACACAACCTCCATCTCTTTGACGGCTGGCTGCGATCTGTTCATGEST: gi|349817476|gb|FQ407266.1|FQ407266
genomic: CCATGATGGAACTGGAGATTGAGCTCAAGAAGGCTTCCGATTCTCTTAAAgtgagtgctt ... tgcatttcagTCATGGGACACAACCTCCATCTCTTTGACGGCTGGCTGCGATCTGTTCATG
EST: CCATGATGGAACTGGAGATTGAGCTCAAGAAGGCTTCCGATTCTCTTAAA TCATGGGACACAACCTCCATCTCTTTGACGGCTGGCTGCGATCTGTTCACGEST: gi|351012185|gb|FQ426907.1|FQ426907
genomic: CCATGATGGAACTGGAGATTGAGCTCAAGAAGGCTTCCGATTCTCTTAAAgtgagtgctt ... tgcatttcagTCATGGGACACAACCTCCATCTCTTTGACGGCTGGCTGCGATCTGTTCATG
EST: CCATGATGGAACTGGAGATTGAGCTCAAGAAGGCTTCCGATTCTCTTAAA TCATGGGACACAACCTCCATCTCTTTGACGGCTGGCTGCGATCTGTTCATGEST: gi|349814725|gb|FQ409948.1|FQ409948
genomic: CCATGATGGAACTGGAGATTGAGCTCAAGAAGGCTTCCGATTCTCTTAAAgtgagtgctt ... tgcatttcagTCATGGGACACAACCTCCATCTCTTTGACGGCTGGCTGCGATCTGTTCATG
EST: CCATGATGGAACTGGAGATTGAGCTCAAGAAGGCTTCCGATTCTCTTAAA TCATGGGACACAACCTCCATCTCTTTGACGGCTGGCTGCGATCTGTTCATGEST: gi|351024997|gb|FQ433414.1|FQ433414
genomic: CCATGATGGAACTGGAGATTGAGCTCAAGAAGGCTTCCGATTCTCTTAAAgtgagtgctt ... tgcatttcagTCATGGGACACAACCTCCATCTCTTTGACGGCTGGCTGCGATCTGTTCATG
EST: CCATGATGGAACTGGAGATTGAGCTCAAGAAGGCTTCCGATTCTCTTAAA TCATGGGACACAACCTCCATCTCTTTGACGGCTGGCTGCGATCTGTTCATGEST: gi|349822671|gb|FQ412935.1|FQ412935
genomic: CCATGATGGAACTGGAGATTGAGCTCAAGAAGGCTTCCGATTCTCTTAAAgtgagtgctt ... tgcatttcagTCATGGGACACAACCTCCATCTCTTTGACGGCTGGCTGCGATCTGTTCATG
EST: CCATGATGGAACTGGAGATTGAGCTCAAGAAGGCTTCCGATTCTCTTAAA TCATGGGACACAACCTCCATCTCTTTGACGGCTGGCTGCGATCTGTTCATGEST: gi|351053555|gb|FQ459302.1|FQ459302
genomic: CCATGATGGAACTGGAGATTGAGCTCAAGAAGGCTTCCGATTCTCTTAAAgtgagtgctt ... tgcatttcagTCATGGGACACAACCTCCATCTCTTTGACGGCTGGCTGCGATCTGTTCATG
EST: CCATGATGGAACTGGAGATTGAGCTCAAGAAGGCTTCCGATTCTCTTAAA TCATGGGACACAACCTCCATCTCTTTGACGGCTGGCTGCGATCTGTTCATGEST: gi|351049282|gb|FQ429025.1|FQ429025
genomic: CCATGATGGAACTGGAGATTGAGCTCAAGAAGGCTTCCGATTCTCTTAAAgtgagtgctt ... tgcatttcagTCATGGGACACAACCTCCATCTCTTTGACGGCTGGCTGCGATCTGTTCATG
EST: CCATGATGGAACTGGAGATTGAGCTCAAGAAGGCTTCCGATTCTCTTAAA TCATGGGACACAACCTCCATCTCTTTGACGGCTGGCTGCGATCTGTTCATGEST: gi|349821346|gb|FQ404478.1|FQ404478
genomic: CCATGATGGAACTGGAGATTGAGCTCAAGAAGGCTTCCGATTCTCTTAAAgtgagtgctt ... tgcatttcagTCATGGGACACAACCTCCATCTCTTTGACGGCTGGCTGCGATCTGTTCATG
EST: CCATGATGGAACTGGAGATTGAGCTCAAGAAGGCTTCCGATTCTCTTAAA TCATGGGACACAACCTCCATCTCTTTGACGGCTGGCTGCGATCTGTTCATGEST: gi|351048077|gb|FQ441249.1|FQ441249
genomic: CCATGATGGAACTGGAGATTGAGCTCAAGAAGGCTTCCGATTCTCTTAAAgtgagtgctt ... tgcatttcagTCATGGGACACAACCTCCATCTCTTTGACGGCTGGCTGCGATCTGTTCATG
EST: CCATGATGGAACTGGAGATTGAGCTCAAGAAGGCTTCCGATTCTCTTAAA TCATGGGACACAACCTCCATCTCTTTGACGGCTGGCTGCGATCTGTTCATGEST: gi|351031133|gb|FQ444960.1|FQ444960
genomic: CCATGATGGAACTGGAGATTGAGCTCAAGAAGGCTTCCGATTCTCTTAAAgtgagtgctt ... tgcatttcagTCATGGGACACAACCTCCATCTCTTTGACGGCTGGCTGCGATCTGTTCATG
EST: CCATGATGGAACTGGAGATTGAGCTCAAGAAGGCTTCCGATTCTCTTAAA TCATGGGACACAACCTCCATCTCTTTGACGGCTGGCTGCGATCTGTTCATGEST: gi|351056004|gb|FQ453465.1|FQ453465
genomic: CCATGATGGAACTGGAGATTGAGCTCAAGAAGGCTTCCGATTCTCTTAAAgtgagtgctt ... tgcatttcagTCATGGGACACAACCTCCATCTCTTTGACGGCTGGCTGCGATCTGTTCATG
EST: CCATGATGGAACTGGAGATTGAGCTCAAGAAGGCTTCCGATTCTCTTAAA TCATGGGACACAACCTCCATCTCTTTGACGGCTGGCTGCGATCTGTTCATGEST: gi|352790509|gb|FQ478149.1|FQ478149
genomic: CCATGATGGAACTGGAGATTGAGCTCAAGAAGGCTTCCGATTCTCTTAAAgtgagtgctt ... tgcatttcagTCATGGGACACAACCTCCATCTCTTTGACGGCTGGCTGCGATCTGTTCATG
EST: CCATGATGGAACTGGAGATTGAGCTCAAGAAGGCTTCCGATTCTCTTAAA TCATGGGACACAACCTCCATCTCTTTGACGGCTGGCTGCGATCTGTTCATGEST: gi|294966190|gb|GW839413.1|GW839413
genomic: CCATGATGGAACTGGAGATTGAGCTCAAGAAGGCTTCCGATTCTCTTAAAgtgagtgctt ... tgcatttcagTCATGGGACACAACCTCCATCTCTTTGACGGCTGGCTGCGATCTGTTCATG
EST: CCATGATGGAACTGGAGATTGAGCTCAAGAAGGCTTCCGATTCTCTTAAA TCATGGGACACAACCTCCATCTCTTTGACGGCTGGCTGCGATCTGGTCATGEST: gi|349822083|gb|FQ408412.1|FQ408412
genomic: CCATGATGGAACTGGAGATTGAGCTCAAGAAGGCTTCCGATTCTCTTAAAgtgagtgctt ... tgcatttcagTCATGGGACACAACCTCCATCTCTTTGACGGCTGGCTGCGATCTGTTCATG
EST: CCATGATGGAACTGGAGATTGAGCTCAAGAAGGCTTCCGATTCTCTTAAA TCATGGGACACAACCTCCATCTCTTTGACGGCTGGCTGCGATCTGTTCATGEST: gi|161715268|gb|FC068022.1|FC068022
genomic: CCATGATGGAACTGGAGATTGAGCTCAAGAAGGCTTCCGATTCTCTTAAAgtgagtgctt ... tgcatttcagTCATGGGACACAACCTCCATCTCTTTGACGGCTGGCTGCGATCTGTTCATG
EST: CCATGATGGAACTGGAGATTGAGCTCAAGAAGGCTTCCGATTCTCTTAAA TCATGGGACACAACCTCCATCTCTTTGACGGCTGGCTGCGATCTGTTCATGEST: gi|110392389|gb|EC957773.1|EC957773
genomic: CCATGATGGAACTGGAGATTGAGCTCAAGAAGGCTTCCGATTCTCTTAAAgtgagtgctt ... tgcatttcagTCATGGGACACAACCTCCATCTCTTTGACGGCTGGCTGCGATCTGTTCATG
EST: CCATGATGGAACTGGAGATTGAGCTCAAGAAGGCTTCCGATTCTCTTAAA TCATGGGACACAACCTCCATCTCTTTGACGGCTGGCTGCGATCTGTTCATG
genomic: CCATGATGGAACTGGAGATTGAGCTCAAGAAGGCTTCCGATTCTCTTAAAgtgagtgctt ... tgcatttcagTCATGGGACACAACCTCCATCTCTTTGACGGCTGGCTGCGATCTGTTCATG
ttttgcatttcatgtatctttcaattgaaatggttaatcttattgtgcatttcagTCATGGGACACAACCTCCATCTCTTTGACGGCTGGCTGCGATCTGTTCATGCGATATGTGACAAGAACTTCCGCTTTAGAATATGAGAACTTTAATTCAG
ggttaat putative branch site (score: 4)
ttaatcttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttaggttggttgaagaagttaagaatagagtaaagacatcagcattttgcatttcatgtatctttcaattgaaatggttaatcttattgtgcatttcagTCATGGGACACAACCTCCATCTCTTTGACGGCTGGCTGCGATCTGTTCATGCGATATGTGACAAGAACTTCCGCTTTAGAATATGAGAACTTTAATTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - ggttggt
- - - - - - gaagaag
- - - - - - - - - - -aagaata
- - - - - - - - - - - - - - - gtaaaga
- - - - - - - - - - - - - - - - - - -catcagc
- - - - - - - - - - - - - - - - - - - - - - - - -gcatttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aattgaa