1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagtgccatgaattttaatctctgctttcctaggttttattattttgcggggttgattttacttgaatgatttgttatgcgtgcagGGAGTGGGTGGAATTGTAGAGTTGGCCCCAGGTTACTTGCCTGCTGTGTACAGCAGCGTAAAGAAAGCAGGAGGCCTTTTTATTGCTGATGAGGTTCAGT
species | Vitis vinifera |
transcript | Vv08s0058g00930.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACTTTGGAACATCTGGCCATGTAGCTGGTTTCATTTCTGAAGCCATACAG GGAGTGGGTGGAATTGTAGAGTTGGCCCCAGGTTACTTGCCTGCTGTGTACEST: gi|110362761|gb|EC926313.1|EC926313
genomic: ACTTTGGAACATCTGGCCATGTAGCTGGTTTCATTTCTGAAGCCATACAGgtaagtgcca ... atgcgtgcagGGAGTGGGTGGAATTGTAGAGTTGGCCCCAGGTTACTTGCCTGCTGTGTAC
EST: ACTTTGGAACATCTGGCCATGTAGCTGGTTTCATTTCTGAAGCCATACAG GGAGTGGGTGGAATTGTAGAGTTGGCCCCAGGTTACTTGCCTGCTGTGTACEST: gi|110390213|gb|EC955113.1|EC955113
genomic: ACTTTGGAACATCTGGCCATGTAGCTGGTTTCATTTCTGAAGCCATACAGgtaagtgcca ... atgcgtgcagGGAGTGGGTGGAATTGTAGAGTTGGCCCCAGGTTACTTGCCTGCTGTGTAC
EST: ACTTTGGAACATCTGGCCATGTAGCTGGTTTCATTTCTGAAGCCATACAG GGAGTGGGTGGAATTGTAGAGTTGGCCCCAGGTTACTTGCCTGCTGTGTACEST: gi|33409685|gb|CF215312.1|CF215312
genomic: ACTTTGGAACATCTGGCCATGTAGCTGGTTTCATTTCTGAAGCCATACAGgtaagtgcca ... atgcgtgcagGGAGTGGGTGGAATTGTAGAGTTGGCCCCAGGTTACTTGCCTGCTGTGTAC
EST: ACTTTGGAACATCTGGCCATGTAGCTGGTTTCATTTCTGAAGCCATACAG GGAGTGGGTGGAATTGTAGAGTTGGCCCCAGGTTACTTGCCTGCTGTGTAC
genomic: ACTTTGGAACATCTGGCCATGTAGCTGGTTTCATTTCTGAAGCCATACAGgtaagtgcca ... atgcgtgcagGGAGTGGGTGGAATTGTAGAGTTGGCCCCAGGTTACTTGCCTGCTGTGTAC
aggttttattattttgcggggttgattttacttgaatgatttgttatgcgtgcagGGAGTGGGTGGAATTGTAGAGTTGGCCCCAGGTTACTTGCCTGCTGTGTACAGCAGCGTAAAGAAAGCAGGAGGCCTTTTTATTGCTGATGAGGTTCAGT
ggttgat putative branch site (score: 5)
ttattatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgccatgaattttaatctctgctttcctaggttttattattttgcggggttgattttacttgaatgatttgttatgcgtgcagGGAGTGGGTGGAATTGTAGAGTTGGCCCCAGGTTACTTGCCTGCTGTGTACAGCAGCGTAAAGAAAGCAGGAGGCCTTTTTATTGCTGATGAGGTTCAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT