Sequence
atgc intronic sequence ATGC exonic sequence...aacataccctcaacctgttacatttatatcatactgtcttttggctttggctccagttcctatcatttgttaagcagacgcactgaatttgtttctccagCTTTGGGACTTTGATGACAGTTGCCCTGCAATGGGAAGGTATTCCTGCATATGTTATCGGAATAGCACGAGGAATAAGCGCTGCAATTGGAATAGCTGCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0058g00730.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA03G05190.1 (Glycine max), 3'ss of exon 4
---aacataccctcaacctgttacatttatatcatactgtcttttggctttggctccagttcc-tatcatttgttaagcagacgcactgaatttgtttctc-cagCTTTGGGACTTTGATGACAGTTGCCCTGCAATGGGAAGGTATTCCTGCATATGTTATCGGAATAGCACGAGGAATAAGCGCTGCAATTGGAATAGCTGCA
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ctgaacacacgttaa----gaaacatgtcttgcattttcttttctttttttgctgtcaattgggcatgaagagtcaatt-gatgaattccaattacttgtctcagCTTTGGAACTTTGATGACAGCCACCTTAGAATGGGAAGGGATACCTGCATACGTTATTGGATTAGCAAGAGGAATAAGCGCTCTGATTGGAATAGCTGCA
upper sequence: Vv08s0058g00730.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA01G31940.1 (Glycine max), 3'ss of exon 4
aacataccctcaacctgttacatttatatcatactgtcttttgg--ctttggctccagttcc-tatcatttgttaagcagacgcactgaatttgtttctccagCTTTGGGACTTTGATGACAGTTGCCCTGCAATGGGAAGGTATTCCTGCATATGTTATCGGAATAGCACGAGGAATAAGCGCTGCAATTGGAATAGCTGCA
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---aaattctgttctaaacacaccttaagaaacatgccttgtatttctttgttgtcagttgggtatgaagagtcattgatgaaattccaattacttgcctcagCTTTGGAACTTTAATGACAGCTACCTTAGAATGGGAAGGAATACCTGAATATATTATTGGAATATCAAGAGGAATAAGTGCTGTGATTGGAATAGCTGCA
upper sequence: Vv08s0058g00730.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA03G05200.1 (Glycine max), 3'ss of exon 2
-----------------------------aacataccctcaacctgt-tacatttatatcatactgtcttttgg--ctttggctccagttcc-tatcatttgttaagcagacgcactgaatttgtttctccagCTTTGGGACTTTGATGACAGTTGCCCTGCAATGGGAAGGTATTCCTGCATATGTTATCGGAATAGCACGAGGAATAAGCGCTGCAATTGGAATAGCTGCA
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ttatattgcagtcgttggacaaagtcactcataaaatttcattctaaacacaccttaagaaacatgccttgtagttctttgttgtcagttgggtatgaagAGTCACTGATGAAATTCCAATTACTTGCCTCAGCTTTGGAACTTTGATGACAGCTACCTTAAAATGGGAAGGAATACCTGCATATGTTATTGGAATAGCA---------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|34547989|gb|CF516221.1|CF516221EST: GTGGTGCTTTCAGGAGTAGCTCTAGCATTACTGTATTTTACTGTTCTCAG CTTTGGGACTTTGATAACAGTTGCCCTGCAATGGGAAGGTATTCCTGCATA
genomic: GTGGTGCTTTCAGGAGTAGCTCTAGCATTACTGTATTTTACTGTTCTCAGgtgattaccc ... gtttctccagCTTTGGGACTTTGATGACAGTTGCCCTGCAATGGGAAGGTATTCCTGCATA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttggctccagttcctatcatttgttaagcagacgcactgaatttgtttctccagCTTTGGGACTTTGATGACAGTTGCCCTGCAATGGGAAGGTATTCCTGCATATGTTATCGGAATAGCACGAGGAATAAGCGCTGCAATTGGAATAGCTGCA
tttgtttctcc CT-rich tract
atttgttaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aacataccctcaacctgttacatttatatcatactgtcttttggctttggctccagttcctatcatttgttaagcagacgcactgaatttgtttctccagCTTTGGGACTTTGATGACAGTTGCCCTGCAATGGGAAGGTATTCCTGCATATGTTATCGGAATAGCACGAGGAATAAGCGCTGCAATTGGAATAGCTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - ccctcaa
- - - - - - - ctgttac
- - - - - - - - - - - - - - -catactg
- - - - - - - - - - - - - - - - - - -cttttgg
- - - - - - - - - - - - - - - - - - - - - - - - ggctcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gacgcac