1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gaaattttctagcagctgagacagcaaaattttgtttccttttactgtatttcatcacatttataaattgtatattaatatggtggccctttgtcaacagGTATTGTTCTTCAGGTGAGAACTTGACCGTTGACCATGTTCTACCAATTGCACGAGGTGGAGAATGGAAATGGGAAAATCTG
species | Vitis vinifera |
transcript | Vv08s0007g07540.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AACAACCTTAGTCGTAAAAATATATTTTATCGGGACAATTTCACTTGTCA GTATTGTTCTTEST: gi|122689451|gb|EC939681.1|EC939681
genomic: AACAACCTTAGTCGTAAAAATATATTTTATCGGGACAATTTCACTTGTCAgtaagtaatc ... ttgtcaacagGTATTGTTCTT
EST: AACAACCTTAGTCGTAAAAATATATTTTATCGGGACAATTTCACTTGTCA GTATTGTTCTTCAGGTGAGAACTTGACCGTTGACCATGTTCTACCAATTGCEST: gi|294966866|gb|GW839741.1|GW839741
genomic: AACAACCTTAGTCGTAAAAATATATTTTATCGGGACAATTTCACTTGTCAgtaagtaatc ... ttgtcaacagGTATTGTTCTTCAGGTGAGAACTTGACCGTTGACCATGTTCTACCAATTGC
EST: AACAAGCTTAGTCGTAAAAATATATTTTATCGGGACAATTTCACTTGTCA GTATTGTTCTTCAGGTGAGAACTTGACCGTTGACCATGTTCTACCAA
genomic: AACAACCTTAGTCGTAAAAATATATTTTATCGGGACAATTTCACTTGTCAgtaagtaatc ... ttgtcaacagGTATTGTTCTTCAGGTGAGAACTTGACCGTTGACCATGTTCTACCAA
tgtatttcatcacatttataaattgtatattaatatggtggccctttgtcaacagGTATTGTTCTTCAGGTGAGAACTTGACCGTTGACCATGTTCTACCAATTGCACGAGGTGGAGAATGGAAATGGGAAAATCTG
tattaat putative branch site (score: 2)
ccctttgtc putative PPT
ttcatcacatttataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaattttctagcagctgagacagcaaaattttgtttccttttactgtatttcatcacatttataaattgtatattaatatggtggccctttgtcaacagGTATTGTTCTTCAGGTGAGAACTTGACCGTTGACCATGTTCTACCAATTGCACGAGGTGGAGAATGGAAATGGGAAAATCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - agcagct
- - - - - - - - - - - agcaaaa
- - - - - - - - - - - - - - - - tgtttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtggc