Sequence
atgc intronic sequence ATGC exonic sequence...cttgtatcatatattgaattgcagtctctgtagcatgcctcatcattgaatatattagcaaactatacaaacatctcagagtataattgtattactgcagGGAGTTTCTAGTTGATTTGGTTGGCAAGCCAGGGTGCTTATGCGAGCCTGATTCTTTGCTCAATGGTCCAGCTTCCATCTCAATTTCTTCCCCATTGCGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g03910.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA10G07610.1 (Glycine max), 3'ss of exon 5
cttgtatcatatattgaattgcagtctctgtagcatgcctcatcattgaatatattagcaaactatacaaacatctcagag-tataattgtattactgcagGGAGTTTCTAGTTGATTTGGTTGGCAAGCCAGGGTGCTTATGCGAGCCTGATTCTTTGCTCAATGGTCCAGCTTCCATCTCAATTTCTTCCCCATTGCGC
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attggttaacttgtgagcattctgtttat-tgtcattttaaatatatgtttctttatagtaatattcctgacacctctcatctttcataatctaaatacagGGAGTATCTTGTTGATTTAATTGGAAAGCCAGGAAACTTATCCGAGCCTGATTCCTTGCTCAATGGTCCATCTTCCATCTCATTTTCTTCACCCTTGCGC
upper sequence: Vv08s0007g03910.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA13G21480.1 (Glycine max), 3'ss of exon 4
cttgtatcatatattgaattgcagtctctgtagcatgcctcatcattgaatatattagcaaactatacaaacatctcagagtata-attgtattactgcagGGAGTTTCTAGTTGATTTGGTTGGCAAGCCAGGGTGCTTATGCGAGCCTGATTCTTTGCTCAATGGTCCAGCTTCCATCTCAATTTCTTCCCCATTGCGC
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attggttaacatgttaacattctgtttat-tgacattttaaatatatctttattaatggtaatattcctgacacctctcatcttacataatctaaatacagGGAGTATCTTGTTGATTTAATTGGAAAGCCAGGAAACTTATCTGAGCCTGATTCCTTGCTCAATGGTCCATCTTCCATCTCATTTTCTTCACCCTTGCGC
upper sequence: Vv08s0007g03910.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA19G37570.1 (Glycine max), 3'ss of exon 4
----------------------------------------------------------------------------------------cttg--tatcatatattgaattgcagtctctgtagcatgcctcatcattgaatatattagcaaactatacaaacatctcagagtataattgtattactgcagGGAGTTTCTAGTTGATTTGGTTGGCAAGCCAGGGTGCTTATGCGAGCCTGATTCTTTGCTCAATGGTCCAGCTTCCATCTCAATTTCTTCCCCATTGCGC
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gtatatgtttcgttgcttagcacatctgctattctgcttataagcaggactgcaatttcaaagaattgttttcccatgagctgtgaaccgtgaccatggaatgatgaagtgtaaaattatgaatgcattgtagccttgca---gttaacatcctgtaaactgacacctgtctgaaaccatataattacagGGAATACATGGTTGATCTTATTGGGAAGCCGGGTTGCTTATGCGAGCCTGATTCCTTGGTCAATGGTCCATCTTCCATTTCATTTTCTTCACCCTTGTGC
upper sequence: Vv08s0007g03910.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA03G34890.1 (Glycine max), 3'ss of exon 5
-----------------------------------------------------------------------------------------cttgtatcatatattgaattgcagtctctgtagcatgcctcatcattgaatatattagcaaactatacaaacatctcagagtataattgtattactgcagGGAGTTTCTAGTTGATTTGGTTGGCAAGCCAGGGTGCTTATGCGAGCCTGATTCTTTGCTCAATGGTCCAGCTTCCATCTCAATTTCTTCCCCATTGCGC
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gtatttgttttgttgcttagcacatctgctattctgtttacaagtaggactgcaatttaaagagttgttttcccatgggctgtgaactgtgaccatgaaatgatgaagtgtaaaattatgaatatgttgtagtcttgca---gttaacattctgtaaactgacatctgtctgaaaccatataattacagGGAATACATGGTTGATCTTATTGGGAAGCCGGGTTGCTTATGCAAGCCTGATTCCTTGATCAATGGTCCATCCTCCATTTCATTTTCTTCACCCTTGCGC
upper sequence: Vv08s0007g03910.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT5G03730.2 (Arabidopsis thaliana), 3'ss of exon 4
--------------------------------cttgtatcatatattgaattgcagtctctgtagcatgcctcatcattgaatatatta-gcaaactat-acaaacatctcagagtataattgtatta-ctgcagGGAGTTTCTAGTTGATTTGGTTGGCAAGCCAGGGTGCTTATGCGAGCCTGATTCTTTGCTCAATGGTCCAGCTTCCATCTCAATTTCTTCCCCATTGCGC
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gtatgatacaagtgattgcgaaagagcctttattttcctattttctttgctttttgtttctggaaaaacaattatagctccaaatgtttcgcagaatattaggttgatgacgtggaaaatttgttttggtttcagGGAGTACCTGGTTGATTTAGTAGGAAAGCCAGGTCACTTATGGGAGCCTGATTCCTTGCTAAATGGTCCTTCATCTATCTCAATTTCTTCTCCTCTGCGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgaatatattagcaaactatacaaacatctcagagtataattgtattactgcagGGAGTTTCTAGTTGATTTGGTTGGCAAGCCAGGGTGCTTATGCGAGCCTGATTCTTTGCTCAATGGTCCAGCTTCCATCTCAATTTCTTCCCCATTGCGC
agtataattgtatta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cttgtatcatatattgaattgcagtctctgtagcatgcctcatcattgaatatattagcaaactatacaaacatctcagagtataattgtattactgcagGGAGTTTCTAGTTGATTTGGTTGGCAAGCCAGGGTGCTTATGCGAGCCTGATTCTTTGCTCAATGGTCCAGCTTCCATCTCAATTTCTTCCCCATTGCGC
- - - - - - - - - - -cagtctc
- - - - - - - - - - - - - - - tagcatg
- - - - - - - - - - - - - - - - - - -cctcatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - agcaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catctca