Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atataatataatgatactaagtgcaatagcttaaaatctaggttcatttgttacatttcttccttgcatcatatttatacttgtcaggtggttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTAATGAAACAAAAGCAATGGTGAAGTTCCAACTTAAGAAGGTTCTCTGCAT

Basic information

species Vitis vinifera
transcript Vv08s0007g03340.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g03340.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA19G37980.2 (Glycine max), 3'ss of exon 4
atataatataatgatactaagtgcaatagcttaaaatctaggttcatttgttacatttc---ttccttgcatcatatttatacttgtcaggtggttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTAATGAAACAAAAGCAATGGTGAAGTTCCAACTTAAGAAGGTTCTCTGCAT
   || ||   ||    | |  |    | ||| |  ||| |     |||| |  ||  |   ||  ||   |  ||| |     | | ||    | | |||||| || ||||||||| | |||||||||||||| ||| | ||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| || ||
---tattaatgtggctgtgatggttgaaacttcagttcttgtactttttgattgataccctattgtttatctgctatatgactgtatgagcacatgaatgcagGTAAATTTCCAACATTAGTGACTCATCAGGAGTCCTTGGAGTCAAAAGTTAATGAAACAAAGGCAATGGTGAAGTTTCAACTTAAGAAAGTTCTTTGTAT

upper sequence: Vv08s0007g03340.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT1G08360.1 (Arabidopsis thaliana), 3'ss of exon 4
----------------------------------------------------------------------------atataatataatgata-ctaagtgcaatagcttaaaatctaggttcatttg--ttacatttcttccttgcatcatattt---atacttgtcaggtggttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTAATGAAACAAAAGCAATGGTGAAGTTCCAACTTAAGAAGGTTCTCTGCAT
                                                                            || |  | |    ||  ||   ||  | |     ||  ||   | |  |    |||   |||||   ||  || ||  |   || | | |    |  ||    |||| || || ||||| || ||||  || ||||||||| | |||||||| || ||||||||||| ||||  ||||||||||| || ||||||||||| |||||
gcaagttctggctacagctaatattccattgttcttctttacatccgttttgattttggataggttttagtagtctatttcttttgtcaatgtctttttgatacaatgccaatcctttatcctgtgagattatgcttctttgatgattcttaagtaacattcctttgctttactttacacagGAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGTGAATGAAACAAAGGCAACAGTGAAGTTCCAGCTGAAGAAGGTTCTGTGCAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26262383|gb|CA813446.1|CA813446
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATC
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATC
EST: gi|22011259|gb|BQ796293.1|BQ796293
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|30301785|gb|CB978579.1|CB978579
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|71875889|gb|DT024944.1|DT024944
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|110404585|gb|EC969873.1|EC969873
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|71871978|gb|DT021033.1|DT021033
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|110703668|gb|EE080714.1|EE080714
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|110360906|gb|EC924349.1|EC924349
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|110384035|gb|EC948448.1|EC948448
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|110689784|gb|EE066309.1|EE066309
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|34415543|gb|CF414297.1|CF414297
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCANCAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|110388044|gb|EC952758.1|EC952758
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|51051057|gb|CO818864.1|CO818864
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|110694683|gb|EE072005.1|EE072005
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|110397634|gb|EC963419.1|EC963419
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|110356712|gb|EC919741.1|EC919741
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|33404221|gb|CF209848.1|CF209848
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|71870117|gb|DT019172.1|DT019172
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|71871003|gb|DT020058.1|DT020058
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|349830672|gb|FQ416970.1|FQ416970
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|22015558|gb|BQ800592.1|BQ800592
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|110393717|gb|EC959153.1|EC959153
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|77587724|gb|DV223042.1|DV223042
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|71875890|gb|DT024945.1|DT024945
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|34549349|gb|CF517581.1|CF517581
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|110356842|gb|EC919961.1|EC919961
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|71876160|gb|DT025215.1|DT025215
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|110687707|gb|EE065427.1|EE065427
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|71874422|gb|DT023477.1|DT023477
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|22013875|gb|BQ798909.1|BQ798909
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|110380293|gb|EC945545.1|EC945545
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|110693123|gb|EE069080.1|EE069080
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|110379757|gb|EC944976.1|EC944976
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|352781285|gb|FQ467366.1|FQ467366
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|71872406|gb|DT021461.1|DT021461
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|110423525|gb|EC989871.1|EC989871
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|110421651|gb|EC987951.1|EC987951
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|110364654|gb|EC928065.1|EC928065
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|351028843|gb|FQ433273.1|FQ433273
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|33410060|gb|CF215687.1|CF215687
EST:     TGTCATCAAACAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|351055527|gb|FQ442323.1|FQ442323
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|30252603|gb|CB970154.1|CB970154
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|351014201|gb|FQ434790.1|FQ434790
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|351018802|gb|FQ425704.1|FQ425704
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGATCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|110692322|gb|EE071432.1|EE071432
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|77581967|gb|DV219934.1|DV219934
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|351027814|gb|FQ446981.1|FQ446981
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|351014830|gb|FQ438030.1|FQ438030
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|51052241|gb|CO819460.1|CO819460
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|37189692|gb|CF609041.1|CF609041
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|351029680|gb|FQ427520.1|FQ427520
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|110427995|gb|EC994454.1|EC994454
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|110703239|gb|EE079921.1|EE079921
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGA---AAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|351045429|gb|FQ440614.1|FQ440614
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|110405108|gb|EC970641.1|EC970641
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|71873842|gb|DT022897.1|DT022897
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|110693002|gb|EE068854.1|EE068854
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|33404136|gb|CF209763.1|CF209763
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|110359409|gb|EC920847.1|EC920847
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|46918226|gb|CN547555.1|CN547555
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|71870960|gb|DT020015.1|DT020015
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|77577695|gb|DV217591.1|DV217591
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|110399863|gb|EC966394.1|EC966394
EST:     TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
EST: gi|33409988|gb|CF215615.1|CF215615
EST:     TGTCATCAAACAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAG                         GGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA
genomic: TGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGgcaagtggtg ... gttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttgttacatttcttccttgcatcatatttatacttgtcaggtggttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTAATGAAACAAAAGCAATGGTGAAGTTCCAACTTAAGAAGGTTCTCTGCAT
                      atcatatttatactt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atataatataatgatactaagtgcaatagcttaaaatctaggttcatttgttacatttcttccttgcatcatatttatacttgtcaggtggttactgcagGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTAATGAAACAAAAGCAATGGTGAAGTTCCAACTTAAGAAGGTTCTCTGCAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - -cttaaaa