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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agtccaaagttttttggctaattctccgttgtgttgttattatggttcagccattctggagctgtcttatattatcaatctgaatttaagggtcgcgcagGGTGTGGGAAAAGCTTACAATGAGTTGAAGCAAGGAGAGCCAGCTATTGAACGCTTGTTTGATTTGACCAGGTTTGAATCTCAG

Basic information

species Vitis vinifera
transcript Vv08s0007g03180.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g03180.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT5G03910.1 (Arabidopsis thaliana), 3'ss of exon 4
agtccaaagttttttggcta----attctccgttgtgttgttattatggttcagccattctggagctgtcttatattatcaatctgaatttaagggtcgcgcagGGTGTGGGAAAAGCTTACAATGAGTTGAAGCAAGGAGAGCCAGCTATTGAACGCTTGTTTGATTTGACCAGGTTTGAATCTCAG
 ||  | | || | |   |     ||||   |   ||    |||  |  ||     ||   |||||||||||||  |   | | ||||| |||    |  ||||| | ||||||||||||| ||||| ||||| |||||||||||||| || ||||| |||||||||||||||   || |||||| ||
-gtagatacttgtgtcagtgtggcattccatgccttgcctctatacttttttgtgtatagaggagctgtcttat--tgggattttgaatctaaaaaacatgcagGATTTGGGAAAAGCTTATAATGAATTGAAACAAGGAGAGCCAGCGATAGAACGTTTGTTTGATTTGACCTCTTTGGAATCTAAG

upper sequence: Vv08s0007g03180.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: PP1S14_278V6.1 (Physcomitrella patens), 3'ss of exon 4
-------agtccaaagttttttggctaattctccgttgtgttgttattatggttcagc-cattctggagctgtcttatattatcaatctgaatttaagggtcgcgcagGGTGTGGGAAAAGCTTACAATGAGTTGAAGCAAGGAGAGCCAGCTATTGAACGCTTGTTTGATTTGACCAGGTTTGAATCTCAG
       ||     | | ||  |  | |   | |  | |    || | |||   |||  || |       |  |  || |  |   | ||   |   |  |    |||| | |||| ||||| ||||||||||||||||||||||| ||||| ||||||||  | ||||| ||||| |  ||  || |  ||
catgcaaagaaagcactcttgcgatttacatttc-ctatacaattctcatgtgacagttcacttcaatcataacggatttgcttggtttg---tctggaat----cagGCTATGGGCAAAGCCTACAATGAGTTGAAGCAAGGAGAACCAGCAATTGAACGTCTATTTGACTTGACAAATTTCAAACCCAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcagccattctggagctgtcttatattatcaatctgaatttaagggtcgcgcagGGTGTGGGAAAAGCTTACAATGAGTTGAAGCAAGGAGAGCCAGCTATTGAACGCTTGTTTGATTTGACCAGGTTTGAATCTCAG
                     ttatattatcaatctg  TA-rich tract