Sequence
atgc intronic sequence ATGC exonic sequence...tataatcacaaagcatgtctattgattcaacctgcaacttatgtatactgttgatatccacattctctgtttcttttggtcattttgtcatgttttgcagGTACCGCATCTCTCTGTTTTCTCGCTGGAAGCAAAGAGGAATGTATGCAGCATGCATGTGGAGTGTTCAATTGCTTCTGGTTCTTAGCAAAATGGATTCC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g01490.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA06G15090.1 (Glycine max), 3'ss of exon 3
tataatcacaaagcatgtctattgattcaacctgcaactt--atgtatactgttgatatccacatt----ctctgtttcttttggtcattttgtcatgttttgcagGTACCGCATCTCTCTGTTTTCTCGCTGGAAGCAAAGAGGAATGTATGCAGCATGCATGTGGAGTGTTCAATTGCTTCTGGTTCTTAGCAAAATGGATTCC
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---aaaaaaaaagcctagcttctaggtcttgataacattgtgatgcacatcattgttttttctcttatagccttgttttttggggtcattt---cttgctttacagGTACCGCATCTCTCTATTTTCTCGATGGAAGCAGAGAGGAATGTATGCAATGTGCATGTGGGTTGTCCAGTTGCTACTGGTTCTTAGCAATATGGATTCA
upper sequence: Vv07s0031g01490.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA04G39780.1 (Glycine max), 3'ss of exon 3
tataatcacaaagcatgtctattgattcaacctgcaacttatgtatactgttgatatccacatt----ctctgtttcttttggtcattttgtcatgttttgcagGTACCGCATCTCTCTGTTTTCTCGCTGGAAGCAAAGAGGAATGTATGCAGCATGCATGTGGAGTGTTCAATTGCTTCTGGTTCTTAGCAAAATGGATTCC
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aaaaaaagcctagctt-tctaagtcttgataacactgtgaatgcatatcattgttgtttcttttacagccttgttttttggggtcattt---cttgctttacagGTATCGCATCTCTCTATTTTCTCGATGGAAGCAGAGAGGAATGTATGCAATGTGCATGTGGGTTGTCCAGTTACTACTGGTTCTTAGCAATATGGATTCG
upper sequence: Vv07s0031g01490.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT2G22010.1 (Arabidopsis thaliana), 3'ss of exon 4
-----------------------------tataatcacaaagcatgtctattga-----ttcaacctgcaacttatgtatactgttgatatccacattctctgtttcttttggtcattttgtcatgttttg-cagGTACCGCATCTCTCTGTTTTCTCGCTGGAAGCAAAGAGGAATGTATGCAGCATGCATGTGGAGTGTTCAATTGCTTCTGGTTCTTAGCAAAATGGATTCC
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gtaagtttcacttaactcatggattgcgttaactccagaaggagggtgtagtgaagaggtttcagttatgattcatgtga---ggcaacatt-acaatctatatttttgccc-tcattctgaatcattttgtcagGTTCCGCATCTCATTGTTCTCTCGATGGAAGCAAAGGGGAATGTATGCATTGTGCATGTGGGTTGTACAGCTACTTCTGGTTCTCAGCAAAATGGATTCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tactgttgatatccacattctctgtttcttttggtcattttgtcatgttttgcagGTACCGCATCTCTCTGTTTTCTCGCTGGAAGCAAAGAGGAATGTATGCAGCATGCATGTGGAGTGTTCAATTGCTTCTGGTTCTTAGCAAAATGGATTCC
tgttgat putative branch site (score: 4)
tttctttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tataatcacaaagcatgtctattgattcaacctgcaacttatgtatactgttgatatccacattctctgtttcttttggtcattttgtcatgttttgcagGTACCGCATCTCTCTGTTTTCTCGCTGGAAGCAAAGAGGAATGTATGCAGCATGCATGTGGAGTGTTCAATTGCTTCTGGTTCTTAGCAAAATGGATTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- -aatcaca
- - - - - - gcatgtc
- - - - - - - - - - - - -ttcaacc
- - - - - - - - - - - - - - - - tgcaact
- - - - - - - - - - - - - - - - - - - - - - - -ctgttga