Sequence
atgc intronic sequence ATGC exonic sequencegtatgtatgatctttctccttccctcttccccttcccttctctcctgtgaagaagaggtggtgactatttgtttctgtttttgtagCTATGTAGCTCCTGAATATGCAAGTACAGGCATGTTGAATGAAAGAAGTGATGTGTATAGTTTTGGGATTCTTATCATGGAAATAATTTCTGGGAGGAAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g00480.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os04g35080.1 (Oryza sativa), 3'ss of exon 4
gtatgtatgatctttctccttccctcttccccttcccttctctcctgtgaagaagaggtggtgactatttgtttctgtttttgtagCTATGTAGCTCCTGAATATGCAAGTACAGGCATGTTGAATGAAAGAAGTGATGTGTATAGTTTTGGGATTCTTATCATGGAAATAATTTCTGGGAGGAAT
|| || || | | | | | | ||| | | | | | ||| | |||| || || |||||||| || ||||| |||| |||||||| ||||||| |||||||| ||||||||||| |||||||||||||||||||| ||||| ||
----gttagaaattagcacccttgtaatgtgataattgtacaagacac-atgaatattttgcttatgcatcttttgttctttgcagGTACGTAGCTCCAGAGTATGCTGGTACTGGCATGTTAAATGAAACTAGTGATGTCTATAGTTTTGGAATTCTTATCATGGAAATAATATCTGGTCGGGTA
upper sequence: Vv07s0031g00480.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os02g34430.1 (Oryza sativa), 3'ss of exon 4
gtatgtatgatctttctccttccctcttccccttcccttctctcctgtgaagaagaggtggtgactatttgtttctg-tttttgtagCTATGTAGCTCCTGAATATGCAAGTACAGGCATGTTGAATGAAAGAAGTGATGTGTATAGTTTTGGGATTCTTATCATGGAAATAATTTCTGGGAGGAAT
| | || | | | | || || | | |||| |||| || |||| | | | || ||||| ||||| || |||||| | || || ||| | || |||| ||| ||||| ||||||||||| |||||||||||||||||||| || || |
------gttagattcggcacactatgaacatacccctagaatcccagatgaatgttcatggttactaattttttccactctctacagGTATGTTGCTCCAGAGTATGCAGGGACTGGAATGCTAAACGAAACAAGCGATGTATATAGTTTTGGAATTCTTATCATGGAAATAATATCCGGTCGAGTA
upper sequence: Vv07s0031g00480.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G050861_T01 (Zea mays), 3'ss of exon 4
gtatgtatgatctttctccttccctcttccccttcccttctctcctgtgaagaagag-gtggtgactatttgt---ttctgtt-tttgtagCTATGTAGCTCCTGAATATGCAAGTACAGGCATGTTGAATGAAAGAAGTGATGTGTATAGTTTTGGGATTCTTATCATGGAAATAATTTCTGGGAGGAAT
|| || | | | | | | | | | ||| | || ||| |||||| || || | || |||| ||| || ||||| || || || ||||| | || |||||||||||||||| || ||||| |||||||| || |||||||||||||||||||| ||||| |
----gttaga-catcaacgctgcttataagattaggatcctccaagataaacaagtttgtggtggcttattttaaattttgttgcttgcagGTATGTTGCACCAGAGTATGCGGGCACTGGCATGTTGAATGAAACTAGCGATGTCTATAGTTTCGGAATTCTTATCATGGAAATAATATCTGGCCGTGTA
upper sequence: Vv07s0031g00480.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G040964_T01 (Zea mays), 3'ss of exon 4
gtatgtatgatctttctccttccctcttccccttcccttctctcc-------tgtgaagaagaggtggtgactatttgtttctgttt------ttgtagCTATGTAGCTCCTGAATATGCAAGTACAGGCATGTTGAATGAAAGAAGTGATGTGTATAGTTTTGGGATTCTTATCATGGAAATAATTTCTGGGAGGAAT
|| |||| | | | | | | ||| | || | | ||||| | || || | | |||| | | | || ||||| ||||| || || ||| | || || ||||||||||||| ||| || | |||||||||||||||||||| ||||| ||||| || || |||
---gttagaatctgttcagtgcacacctaggctttcattaacatcaggtggctgtgactgatcactgatgggtgctgatttccttctcactcatcacagGTATGTTGCTCCAGAGTACGCAGGGACTGGGATGTTGAATGAAACAAGCGACATATATAGTTTTGGGATTCTTATAATGGAGATAATATCCGGTAGGGTA
upper sequence: Vv07s0031g00480.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA01G39420.1 (Glycine max), 3'ss of exon 5
gtatgtatgatctttctccttccctctt--ccccttcccttctctc------ctgtgaagaagaggtggtgac--------tatttgtttctgtttttgtagCTATGTAGCTCCTGAATATGCAAGTACAGGCATGTTGAATGAAAGAAGTGATGTGTATAGTTTTGGGATTCTTATCATGGAAATAATTTCTGGGAGGAAT
|| ||||| |||| || || | || ||| |||| | || | | || | | | | | | || |||||| | |||||| || ||||| ||||||||||| |||||||| ||||||||||||||| | |||||||| ||||||||||| ||||| || |||||| ||||| | || ||||||
gtttgtatagtcttccttctctattgttggcccattccttccttacaagtatcggtcattatgggtttccagcaattgccttacttgtttttctttttgcagATATGTTGCTCCTGAATACGCAAGTACTGGCATGTTGAATGAACGGAGTGATGTTTATAGTTTTGGAATTCTAATTATGGAACTAATTACAGGAAGGAAT
upper sequence: Vv07s0031g00480.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA11G05830.1 (Glycine max), 3'ss of exon 4
gtatgtatgatctttctccttccctcttccccttcccttctctc----------ctgtgaagaagaggtggtgactatt--------tgtttctgtttttgtagCTATGTAGCTCCTGAATATGCAAGTACAGGCATGTTGAATGAAAGAAGTGATGTGTATAGTTTTGGGATTCTTATCATGGAAATAATTTCTGGGAGGAAT
|| ||||| ||||| || | | || | | | ||| || | || | | | | ||| |||| | |||| | || ||||| ||||||||||| || ||||| ||||||||||||||| | |||||||| ||||||||||| |||||||| |||||| ||||| | || ||||||
gtttgtattatcttccttgtctattgttgctccattgcttgctcaaagcattattggtcatgacgggtttccatcaattcccttaattgttcttcttttggcagATATGTTGCTCCTGAATACGCGAGTACTGGCATGTTGAATGAACGGAGTGATGTTTATAGTTTTGGAATTCTTATTATGGAACTAATTACAGGAAGGAATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|294965685|gb|GW839140.1|GW839140EST: CTTGGCTCAGAGCACAGCTATGTAACAACCCGAGTGATGGGAACATTTGG CTATGTAGCTCCTGAATATGCAAGTACAGGCATGTTGAATGAAAGAAGCGA
genomic: CTTGGCTCAGAGCACAGCTATGTAACAACCCGAGTGATGGGAACATTTGGgtatgtatga ... gtttttgtagCTATGTAGCTCCTGAATATGCAAGTACAGGCATGTTGAATGAAAGAAGTGA
EST:
gi|110695044|gb|EE072613.1|EE072613EST: CAGCTATGTAACAACCCGAGTGATGGGAACATTTGG CTATGTAGCTCCTGAATATGCAAGTACAGGCATGTTGAATGAAAGAAGTGA
genomic: CAGCTATGTAACAACCCGAGTGATGGGAACATTTGGgtatgtatga ... gtttttgtagCTATGTAGCTCCTGAATATGCAAGTACAGGCATGTTGAATGAAAGAAGTGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttcccttctctcctgtgaagaagaggtggtgactatttgtttctgtttttgtagCTATGTAGCTCCTGAATATGCAAGTACAGGCATGTTGAATGAAAGAAGTGATGTGTATAGTTTTGGGATTCTTATCATGGAAATAATTTCTGGGAGGAAT
tttgtttctgttttt CT-rich tract
tatttgttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgtatgatctttctccttccctcttccccttcccttctctcctgtgaagaagaggtggtgactatttgtttctgtttttgtagCTATGTAGCTCCTGAATATGCAAGTACAGGCATGTTGAATGAAAGAAGTGATGTGTATAGTTTTGGGATTCTTATCATGGAAATAATTTCTGGGAGGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA