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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacttctttctcttttattctcttgaaaaacaaaaattgggttcccatcatcattaatcctgatgttgtgatgatctaatgttttgaaattacagCATAAGATACGACAACAAGGTGTTTATGAGTCCCTTCATCGAGACATAATGGTGCATTTTGGAAAGTGGGATTTCGACCCAATGGAACTGAAAAATCCCT

Basic information

species Vitis vinifera
transcript Vv06s0080g00320.t01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34415418|gb|CF414172.1|CF414172
EST:     AAGATGTAGAAATCATACAGACAATATCAAAGATTCCAATGCCAGATGAG                         CATAAGATACGACAACAAGGTGTTTATGAGTCCCTTCATCGAGACATAATG
genomic: AAGATGTAGAAATCATACAGACAATATCAAAGATTCCAATGCCAGATGAGgtaacttctt ... gaaattacagCATAAGATACGACAACAAGGTGTTTATGAGTCCCTTCATCGAGACATAATG
EST: gi|110700405|gb|EE078409.1|EE078409
EST:     AAGATGTAGAAATCATACAGACAATATCAAAGATTCCAATGCCAGATGAG                         CATAAGATACGACAACAAGGTGTTTATGAGTCCCTTCATCGAGACATAATG
genomic: AAGATGTAGAAATCATACAGACAATATCAAAGATTCCAATGCCAGATGAGgtaacttctt ... gaaattacagCATAAGATACGACAACAAGGTGTTTATGAGTCCCTTCATCGAGACATAATG
EST: gi|71870857|gb|DT019912.1|DT019912
EST:     AAGATGTAGAAATCATACAGACAATATCAAAGATTCCAATGCCAGATGAG                         CATAAGATACGACAACAAGGTGTTTATGAGTCCCTTCATCGAGACATAATA
genomic: AAGATGTAGAAATCATACAGACAATATCAAAGATTCCAATGCCAGATGAGgtaacttctt ... gaaattacagCATAAGATACGACAACAAGGTGTTTATGAGTCCCTTCATCGAGACATAATG
EST: gi|110700564|gb|EE078744.1|EE078744
EST:     AAGATGTAGAAATCATACAGACAATATCAAAGATTCCAATGCCAGATGAG                         CATAAGATACGACAACAAGGTGTTTATGAGTCCCTTCATCGAGACATAATG
genomic: AAGATGTAGAAATCATACAGACAATATCAAAGATTCCAATGCCAGATGAGgtaacttctt ... gaaattacagCATAAGATACGACAACAAGGTGTTTATGAGTCCCTTCATCGAGACATAATG
EST: gi|110359695|gb|EC921606.1|EC921606
EST:     AAGATGTAGAAATCATACAGACAATATCAAAGATTCCAATGCCAGATGAG                         CATAAGATACGACAACAAGGTGTTTATGAGTCCCTTCATCGAGACATAATG
genomic: AAGATGTAGAAATCATACAGACAATATCAAAGATTCCAATGCCAGATGAGgtaacttctt ... gaaattacagCATAAGATACGACAACAAGGTGTTTATGAGTCCCTTCATCGAGACATAATG
EST: gi|110700619|gb|EE077430.1|EE077430
EST:     AAGATGTAGAAATCATACAGACAATATCAAAGATTCCAATGCCAGATGAG                         CATAAGATACGACAACTAGGTGTTTATGAGTCCCTTCATCGAGACATAATG
genomic: AAGATGTAGAAATCATACAGACAATATCAAAGATTCCAATGCCAGATGAGgtaacttctt ... gaaattacagCATAAGATACGACAACAAGGTGTTTATGAGTCCCTTCATCGAGACATAATG
EST: gi|33403752|gb|CF209379.1|CF209379
EST:     AAGATGTAGAAATCATACAGACAATATCAAAGATTCCAATGCCAGATGAG                         CATAAGATACGACAACAAGGTGTTTATGAGTCCCTTCATCGAGACATAATG
genomic: AAGATGTAGAAATCATACAGACAATATCAAAGATTCCAATGCCAGATGAGgtaacttctt ... gaaattacagCATAAGATACGACAACAAGGTGTTTATGAGTCCCTTCATCGAGACATAATG
EST: gi|77584762|gb|DV221462.1|DV221462
EST:     AAGATGTAGAAATCATACAGACAATATCAAAGATTCCAATGCCAGATGAG                         CATAAGATACGACAACAAGGTGTTTATGAGTCCCTTCATCGAGACATAATA
genomic: AAGATGTAGAAATCATACAGACAATATCAAAGATTCCAATGCCAGATGAGgtaacttctt ... gaaattacagCATAAGATACGACAACAAGGTGTTTATGAGTCCCTTCATCGAGACATAATG
EST: gi|110359195|gb|EC920289.1|EC920289
EST:     AAGATGTAGAAATCATACAGACAATATCAAAGATTCCAATGCCAGATGAG                         CATAAGATACGACAACAAGGTGTTTATGAGTCCCTTCATCGAGACATAATG
genomic: AAGATGTAGAAATCATACAGACAATATCAAAGATTCCAATGCCAGATGAGgtaacttctt ... gaaattacagCATAAGATACGACAACAAGGTGTTTATGAGTCCCTTCATCGAGACATAATG
EST: gi|34361655|gb|CF403240.1|CF403240
EST:     ATATCAAAGATTCCAATGCCAGATGAG                         CATAAGATACGACAACAAGGTGTTTATGAGTCCCTTCATCGAGACATAATG
genomic: ATATCAAAGATTCCAATGCCAGATGAGgtaacttctt ... gaaattacagCATAAGATACGACAACAAGGTGTTTATGAGTCCCTTCATCGAGACATAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttcccatcatcattaatcctgatgttgtgatgatctaatgttttgaaattacagCATAAGATACGACAACAAGGTGTTTATGAGTCCCTTCATCGAGACATAATGGTGCATTTTGGAAAGTGGGATTTCGACCCAATGGAACTGAAAAATCCCT
                                 atctaat  putative branch site (score: 3)
                                    taatgttttgaaatta  TA-rich tract