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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagggtgaacatgactttgtttctttaattttcaattggcatttatggaatataaaggatataactgctttttattttttcccttttgggcatggggttggcgatggatgggttgtggtttcattggttgttggttcagATTTCCAGTAGCTGCCGACCACTTGTGAGGAAGAAAGCTGCGTTGTGTCTTCTGCGCTTGTACAGGAAAAATCCTGATGTTGTCAATGTAGATGGCTG

Basic information

species Vitis vinifera
transcript Vv06s0061g01170.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0061g01170.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA12G30520.1 (Glycine max), 3'ss of exon 4
gtaagggtgaacatgactttgtttctttaattttcaattggcatttatggaatataaaggatataactgctttttattttttcccttttgggcatggggttggcgatggatgggttgtggtttcattggttgttggttcagATTTCCAGTAGCTGCCGACCACTTGTGAGGAAGAAAGCTGCGTTGTGTCTTCTGCGCTTGTACAGGAAAAATCCTGATGTTGTCAATGTAGATGGCTG
                                                         | || || |||||     ||| |       | ||      | ||||  |   || | |  ||  | ||||  |||| | |  |||| || || |||||| |||||||||| || || ||||| || |||||| | |||||| ||||||||||||||||||||||||||||||||||||| ||
-------------------------------------------------------gtaagaaattactgc-----attatcattaaataggtggcttgattggaaa-atattgatgttgactgcatt--ttgt-gatctagATATCGAGCAGCTGCAGACCACTTGTTAGAAAAAAAGCCGCATTGTGTTTGCTGCGCCTGTACAGGAAAAATCCTGATGTTGTCAATGTAGATGGATG

upper sequence: Vv06s0061g01170.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA17G05410.1 (Glycine max), 3'ss of exon 4
gtaagggtgaacatgactttgtttctttaattttcaattggcatttatggaatataaaggatataactgctttttattttttcccttttgggcatggggttggcgatggatgggttgtggtttcattggttgttggttcagATTTCCAGTAGCTGCCGACCACTTGTGAGGAAGAAAGCTGCGTTGTGTCTTCTGCGCTTGTACAGGAAAAATCCTGATGTTGTCAATGTAGATGGCTG
                                                         | || || | |||     |||         | ||      | ||||  |   || | |  |   | ||||  |||| | |  |||| || || |||||| |||||||||| || || ||||| || |||||| | |||||  ||||||||||||||||||||||||||||||||||||| ||
-------------------------------------------------------gtaagaaattattgc-----attagcattaaataggtggcttgattggaaaaatattgatgttaactgcatt--ttgt-gatctagATATCGAGCAGCTGCAGACCACTTGTTAGAAAAAAAGCCGCATTGTGTTTGCTGCGACTGTACAGGAAAAATCCTGATGTTGTCAATGTAGATGGATG

upper sequence: Vv06s0061g01170.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT5G22770.1 (Arabidopsis thaliana), 3'ss of exon 4
gtaagggtgaacatgactttgtttctttaattttcaattggcatttatggaatataaaggatataactgctttttattttttcccttttgggcatggggttggcgatggatgggttgtggtttcattggttgttggttcagATTTCCAGTAGCTGCCGACCACTTGTGAGGAAGAAAGCTGCGTTGTGTCTTCTGCGCTTGTACAGGAAAAATCCTGATGTTGTCAATGTAGATGGCTG
                                            | |  || |   || |||   |     || |||||||| ||        ||     |    ||   |  ||| |||  ||  |     ||| | |||||||| ||||| ||| |||| ||||| ||||| ||||| ||  |||| || |||||||| | | | ||||||||||||| |||||| || ||||||||
-------------------------------------------gtaagtgactcctaaagatgagagg---ttatatttttttcca-------atattactaaacatat-tatgttatggggtctct-----ttgctgcagATTTCTAGTAGTTGCAGACCTCTTGTAAGGAAAAAAGCAGCACTGTGCCTACTGCGCTTATTCCGAAAAAATCCTGATGCTGTCAACGTGGATGGCTG

upper sequence: Vv06s0061g01170.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: EFJ21842 (Selaginella moellendorffii), 3'ss of exon 4
gtaagggtgaacatgactttgtttctttaattttcaattggcatttatggaatataaaggatataactgctttttattttttcccttttgggcatggggttggcgatggatgggttgtggtttcattggttgt-tggttcagATTTCCAGTAGCTGCCGACCACTTGTGAGGAAGAAAGCTGCGTTGTGTCTTCTGCGCTTGTACAGGAAAAATCCTGATGTTGTCAATGTAGATGGCTG
                                                                            |   ||| ||||     || ||  ||| |         |  || |   |   | | | || || ||||||| |    ||| || ||||| ||| ||||||| ||||| ||||||||||||||  | |||||||| ||||| ||||||||||  || || |||||
---------------------------------------------------------------------------gtaagttctcttt-----atcggcctggtgtc-------tcttgatcctaggcgctatgtgctttagATTTCGAACTCCTGTCGGCCACTGGTGCGGAAGAAGGCTGCATTGTGTCTTCTGCGACTTTACAGGAAGAATCCGGATGTTGTCAGCGTGGACGGCTG

upper sequence: Vv06s0061g01170.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: EFJ34224 (Selaginella moellendorffii), 3'ss of exon 4
gtaagggtgaacatgactttgtttctttaattttcaattggcatttatggaatataaaggatataactgctttttattttttcccttttgggcatggggttggcgatggatgggttgtggtttcattggttgt-tggttcagATTTCCAGTAGCTGCCGACCACTTGTGAGGAAGAAAGCTGCGTTGTGTCTTCTGCGCTTGTACAGGAAAAATCCTGATGTTGTCAATGTAGATGGCTG
                                                                                 |   || ||   || ||  ||| |         |  || |   |   | | | || || ||||||| |    ||| || ||||| ||| ||||||| ||||| ||||||||||||||  | |||||||| ||||| ||||||||||  || || |||||
--------------------------------------------------------------------------------gtaagttctgtttatcggcctggtgtc-------tcttgatcctaggcgctatgtgctttagATTTCGAACTCCTGTCGGCCACTGGTGCGGAAGAAGGCTGCATTGTGTCTTCTGCGACTTTACAGGAAGAATCCGGATGTTGTCAGCGTGGACGGCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgggcatggggttggcgatggatgggttgtggtttcattggttgttggttcagATTTCCAGTAGCTGCCGACCACTTGTGAGGAAGAAAGCTGCGTTGTGTCTTCTGCGCTTGTACAGGAAAAATCCTGATGTTGTCAATGTAGATGGCTG
                                  tttcatt  TA-rich tract