Sequence
atgc intronic sequence ATGC exonic sequence...atttatatatactcctaatcctttcttcttctgcttcttctttttatgtgaaaatgttaagactgaggcttgttctttttttttttttttgtttctatagATGGCAAGAATGGATTTAAATGATGACAATGAGAAAGTGAACATAGAAACTATATTCTGGAGTGCTATGGACATGCTTTCAGATGATGATAAAAAGTTAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0009g01750.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os12g18140.1 (Oryza sativa), 3'ss of exon 4
------atttatatatactcctaatcctttcttcttctgcttcttctttttatgtga-aaatgttaagactgaggcttgttctttttttttttttttgt-ttctatagATGGCAAGAATGGATTTAAATGATGACAATGAGAAAGTGAACATAGAAACTATATTCTGGAGTGCTATGGACATGCTTTCAGATGATGATAAAAAGTTAC
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gtatgttcttctgtaaattactg-tgatttagataacagaagattttattgatttggcaaacgggccgatttagtttttttttttactgcccttcttgtatgctatagATGGCTAAGATGGACTTGAATGATGATGATGAGAAGGCAAACATTGAAACAATTTTTTGGAGTGCTATGGATTTGCTTTCAGATGATGATAAGAAGCTTC
upper sequence: Vv06s0009g01750.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G040995_T02 (Zea mays), 3'ss of exon 4
------atttatatatactcctaatcctttct-----tcttctgcttcttctttttatgtgaaaatgttaag--actgaggcttgttctttttttttttttttgtttctatagATGGCAAGAATGGATTTAAATGATGACAATGAGAAAGTGAACATAGAAACTATATTCTGGAGTGCTATGGACATGCTTTCAGATGATGATAAAAAGTTAC
||| | || | | || || || | || | | | ||| | | || | | | || | | | || ||| | ||||||||| | ||||| || ||||| || ||||||| | ||||| ||||| || || |||||||||||||| |||||||| |||||||| |||||| | |
gtatgcttttttgtagattattattcaatttagagaaccagaaaattatgtggtctggaggaagaaatcgagttggttcagttgattttgactatcttccattgggtg-atagATGGCTAAGATGGACTTGAATGAGGATGATGAGAAGGCAAACATCGAAACAATTTTTTGGAGTGCTATGGATATGCTTTCTGATGATGACAAAAAGCTTC
upper sequence: Vv06s0009g01750.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA08G47700.1 (Glycine max), 3'ss of exon 3
atttatatatactcctaatcctttcttcttctgcttcttctttttatgtgaaaatgttaagactgaggcttgttctttttttttttttttgtttctatagATGGCAAGAATGGATTTAAATGATGACAATGAGAAAGTGAACATAGAAACTATATTCTGGAGTGCTATGGACATGCTTTCAGATGATGATAAAAAGTTAC
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----------------------gtaaagtccaaattcttgtgcattgtcaaaagtatcta--tttcttttcattctaatgtcttttttttgtttccgtagATGGCAAAAATGGATCTTAATGGGGATAATGAGAAGGATAATATTGAACAAATATTTTGTAGTGCTATGGACATGCTTTCAGATGATGATAAGAAACTTC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atgtgaaaatgttaagactgaggcttgttctttttttttttttttgtttctatagATGGCAAGAATGGATTTAAATGATGACAATGAGAAAGTGAACATAGAAACTATATTCTGGAGTGCTATGGACATGCTTTCAGATGATGATAAAAAGTTAC
cttgttcttttttttt CT-rich tract
ttgttctttttttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atttatatatactcctaatcctttcttcttctgcttcttctttttatgtgaaaatgttaagactgaggcttgttctttttttttttttttgtttctatagATGGCAAGAATGGATTTAAATGATGACAATGAGAAAGTGAACATAGAAACTATATTCTGGAGTGCTATGGACATGCTTTCAGATGATGATAAAAAGTTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - -ctcctaa
- - - - - - - - - tcctttc
- - - - - - - - - - - - - - - ctgcttc
- - - - - - - - - - - - - - - - - - - - - - - - -gaaaatg