Sequence
atgc intronic sequence ATGC exonic sequencegtaaaacgacataatcatggattttataatatccatggctctagaattaaagttttgtttgaattgcagtctttaaggctttatgctgatggtgttgacacattcaaattttttgtctcagCTGTTGCTGTTTGCTACTGCAAATGATTCAGAAAAGGTTGTCCCAGCATTTCAAGAAGCAGCAAAATCTTTTAAGGGGAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g02890.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA12G29550.1 (Glycine max), 3'ss of exon 4
gtaaaacgacataatcatggattttataatatccatggctctagaattaaagttttgtttgaattgcagtctttaaggctttatgctgatggtgttgacacattcaaattttttgtctcagCTGTTGCTGTTTGCTACTGCAAATGATTCAGAAAAGGTTGTCCCAGCATTTCAAGAAGCAGCAAAATCTTTTAAGGGGAAG
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gtaggtatttatatacatgtattttattatattgtaatctcttgaagaaaaatattctt--gataacatt-------gctctgtg-----------------tttgaaacttcacttttagTTGTTGCTGTTTGCAACTTCAAATGATTCAGAGAAGTTGATCCCTGCATTTAAAGAAGCTGCAAAATCTTTCAAGGGAAAG
upper sequence: Vv06s0004g02890.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA13G40130.1 (Glycine max), 3'ss of exon 4
gtaaaacgacataatcatggattttataatatccatggctctagaattaaagttttgtttgaattgcagtctttaaggctttatgctgatggtgttgacacattcaaattttttgtctcagCTGTTGCTGTTTGCTACTGCAAATGATTCAGAAAAGGTTGTCCCAGCATTTCAAGAAGCAGCAAAATCTTTTAAGGGGAAG
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gtaggtatttatatccatgtatcttattatattgtaatctcttgaagaaaaatattcttggtaatgctg---------ctttgtg-----------------tttgaaacttcacttttagTTGTTGCTGTTTGCAACTTCAAATGATTCAGAGACTTTGGTCCCAGCATTTAAAGAAGCAGCAAAGTCTTTCAAGGGAAAG
upper sequence: Vv06s0004g02890.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA11G20630.1 (Glycine max), 3'ss of exon 4
gtaaaacgacataatcatggattttataatatccatggctctagaattaaagttttgtttgaa-ttgcagtctttaaggctttatgctgatggtgttgacacattcaaattttttgtctcagCTGTTGCTGTTTGCTACTGCAAATGATTCAGAAAAGGTTGTCCCAGCATTTCAAGAAGCAGCAAAATCTTTTAAGGGGAAG
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gtaattacttatacttctgcatctttcttttattgtcaatctaggaacaaatattccttgaaaattggaatcgtgacagactt---ctaaccttgttg-tgtgttaaaaatttcacttttagTTGTTGCTGTTTGTGACTTCAAATGATACAGAGAAGTTTGTTCCAGTATTTAAAGAAGCAGCAAAAATTTTCAAGGGGAAG
upper sequence: Vv06s0004g02890.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA12G07260.1 (Glycine max), 3'ss of exon 4
gtaaaacgacataatcatggattttataatatccatggctctagaattaaagttttgtttgaattgcagtctttaaggctttatgctgatggtgttgacacattcaaattttttgtctcagCTGTTGCTGTTTGCTACTGCAAATGATTCAGAAAAGGTTGTCCCAGCATTTCAAGAAGCAGCAAAATCTTTTAAGGGGAAG
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----------gtaattacttatatttctgtatt-gtcaatctaggaacaaatattccttgtgaatggaatcttgacagactt---ctaaccttgttg-tatgttaaaatttcac-ttttagTTGTTGCTGTTTGTGACTTCAAATGATACAGAGAAGTTTGTTCCAGTATTTAAAGAAGCAGCAAAAAAATTCAAGGGGAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cagtctttaaggctttatgctgatggtgttgacacattcaaattttttgtctcagCTGTTGCTGTTTGCTACTGCAAATGATTCAGAAAAGGTTGTCCCAGCATTTCAAGAAGCAGCAAAATCTTTTAAGGGGAAG
tgttgac putative branch site (score: 3)
ttttttgtctc putative PPT
acattcaaatttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaaacgacataatcatggattttataatatccatggctctagaattaaagttttgtttgaattgcagtctttaaggctttatgctgatggtgttgacacattcaaattttttgtctcagCTGTTGCTGTTTGCTACTGCAAATGATTCAGAAAAGGTTGTCCCAGCATTTCAAGAAGCAGCAAAATCTTTTAAGGGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC