1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gtgacaccctctgattggtaaaatatggaatggagggggaagtgtggaattgagtgctgctgcatattttgtatatttgcatttttccttgaccaagtagTTCACATGTTGAAGTAGCTGAACAAGAGGAAGATGGTGACGAGCATGCTCGTAATGCAAGCAAGAAATCTGCACCAGCACCCATACCAAAACCTGATGTT
species | Vitis vinifera |
transcript | Vv06s0004g00700.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTGTTGAGAGAGATTTATTAAACATCATGGCTGGTGGCACAGTTGAGAAT GT-GGATGTTGAAGTAGCTGAACAAGAGGAAGATGGTGACGAGCATGCTCGEST: gi|30253284|gb|CB970835.1|CB970835
genomic: GTGTTGAGAGAGATTTATTAAACATCATGGCTGGTGGCACAGCTGAGAATgtggatatcc ... gaccaagtagTTCACATGTTGAAGTAGCTGAACAAGAGGAAGATGGTGACGAGCATGCTCG
EST: GTGTTGAGAGAGATTTATTAAACATCATGGCTGGTGGCACAGCTGAGAAT GT-GGATGTTGAAGTAGCTGAACAAGAGGAAGATGGTGACGAGCATGCTCGEST: gi|30297970|gb|CB974764.1|CB974764
genomic: GTGTTGAGAGAGATTTATTAAACATCATGGCTGGTGGCACAGCTGAGAATgtggatatcc ... gaccaagtagTTCACATGTTGAAGTAGCTGAACAAGAGGAAGATGGTGACGAGCATGCTCG
EST: GTGTTGAGAGAGATTTATTAAACATCATGGCTGGTGGCACAGTTGAGAAT GT-GGATGTTGAAGTAGCTGAACAAGAGGAAGATGGTGACGAGCATGCTCG
genomic: GTGTTGAGAGAGATTTATTAAACATCATGGCTGGTGGCACAGCTGAGAATgtggatatcc ... gaccaagtagTTCACATGTTGAAGTAGCTGAACAAGAGGAAGATGGTGACGAGCATGCTCG
ggaattgagtgctgctgcatattttgtatatttgcatttttccttgaccaagtagTTCACATGTTGAAGTAGCTGAACAAGAGGAAGATGGTGACGAGCATGCTCGTAATGCAAGCAAGAAATCTGCACCAGCACCCATACCAAAACCTGATGTT
ccttgac putative branch site (score: 4)
tttttccttg CT-rich tract
atattttgtatatttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgacaccctctgattggtaaaatatggaatggagggggaagtgtggaattgagtgctgctgcatattttgtatatttgcatttttccttgaccaagtagTTCACATGTTGAAGTAGCTGAACAAGAGGAAGATGGTGACGAGCATGCTCGTAATGCAAGCAAGAAATCTGCACCAGCACCCATACCAAAACCTGATGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - caccctc
- - - - - - - - ggtaaaa
- - - - - - - - - - - - - - - -ggagggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgctg