1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...agatgagctctgagactaggtcattgatggatgacacatcttaagcactgatatatcatttgtttttaattaaaaacacattaaattgtatgatgtgcagAGCAATGGAATTTTTGGTTGAGCTGTTTCACAACCTGCTCCAGCATCCAGATTGGACAATGTCGCAAGTCTGTACTGATTCCTATGGCAAGACCCTGAAA
species | Vitis vinifera |
transcript | Vv05s0049g01330.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACTGCAAAAGGATCATCCAGTTGTACCAATGGCCTTCTGTGGTTGACAAG AGCAATGGAATTTTTGGTTGAGCTGTTTCACAACCTGCTCCAGCATCCAGAEST: gi|71883183|gb|DT032238.1|DT032238
genomic: ACTGCAAAAGGATCATCCAGTTGTACCAATGGCCTTCTGTGGTTGACAAGgtatccacta ... tgatgtgcagAGCAATGGAATTTTTGGTTGAGCTGTTTCACAACCTGCTCCAGCATCCAGA
EST: ACTGCAAAAGGATCATCCAGTTGTACCAATGGCCTTCTGTGGTTGACAAG AGCAATGGAATTTTTGGTTGAGCTGTTTCACAACCTGCTCCAGCATCCAGAEST: gi|37188966|gb|CF608315.1|CF608315
genomic: ACTGCAAAAGGATCATCCAGTTGTACCAATGGCCTTCTGTGGTTGACAAGgtatccacta ... tgatgtgcagAGCAATGGAATTTTTGGTTGAGCTGTTTCACAACCTGCTCCAGCATCCAGA
EST: ACTGCAAAAGGATCATCCAGTTGTACCAATGGCCTTCTGTGGTTGACAAG AGCAATGGAATTTTTGGTTGAGCTGTTTCACAACCTGCTCCAGCATCCAGA
genomic: ACTGCAAAAGGATCATCCAGTTGTACCAATGGCCTTCTGTGGTTGACAAGgtatccacta ... tgatgtgcagAGCAATGGAATTTTTGGTTGAGCTGTTTCACAACCTGCTCCAGCATCCAGA
cactgatatatcatttgtttttaattaaaaacacattaaattgtatgatgtgcagAGCAATGGAATTTTTGGTTGAGCTGTTTCACAACCTGCTCCAGCATCCAGATTGGACAATGTCGCAAGTCTGTACTGATTCCTATGGCAAGACCCTGAAA
ttttaat putative branch site (score: 3)
atatatcatttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agatgagctctgagactaggtcattgatggatgacacatcttaagcactgatatatcatttgtttttaattaaaaacacattaaattgtatgatgtgcagAGCAATGGAATTTTTGGTTGAGCTGTTTCACAACCTGCTCCAGCATCCAGATTGGACAATGTCGCAAGTCTGTACTGATTCCTATGGCAAGACCCTGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - tgatgga
- - - - - - - - - - - - - - - - -acacatc
- - - - - - - - - - - - - - - - - - - - ttaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaca