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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagcaattcaaagtttcttatgcaaattttcattctctctttcctctaatatctttcttatgtccagGGCTAGTCCATCTGAGTTTGTCATACCTCTTTCGAAATATGTTAAAGCAGTATTTCACACTCGTGTTTCTGTTGGAATGCGTTTTCGGATGCTTTTTGAG

Basic information

species Vitis vinifera
transcript Vv04s0079g00200.t01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33401803|gb|CF207430.1|CF207430
EST:     GCTCATGCTGCTGCCACTAATAGCTGTTTCACAATCTTTTATAATCCAAG                         GGCTAGTCCATCTGAGTTTGTCATACCCCTTTCGAAATACGTTAAAGCAGT
genomic: GCTCATGCTGCTGCCACTAATAGCTGTTTCACAATCTTTTATAATCCAAGgtagcaattc ... ttatgtccagGGCTAGTCCATCTGAGTTTGTCATACCTCTTTCGAAATATGTTAAAGCAGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttcttatgcaaattttcattctctctttcctctaatatctttcttatgtccagGGCTAGTCCATCTGAGTTTGTCATACCTCTTTCGAAATATGTTAAAGCAGTATTTCACACTCGTGTTTCTGTTGGAATGCGTTTTCGGATGCTTTTTGAG
                               ctctaat  putative branch site (score: 3)
              ttttcattctctcttt  CT-rich tract
                                  taatatctttcttat  TA-rich tract