1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gcaagcaaagtatattatttctgatggttttcaatattaatcttttctaattctgccttgatggtgttacaagtcgctgatgcatgatatttaactgcagCTGAGCGAGAAGCAGTTAATGCAGCAGAAAGAGCTGAGAGAAAACTTCAGCTGAGAGATAAA
species | Vitis vinifera |
transcript | Vv04s0008g03810.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGTTAATAGATTGAACAGGACAAAAGTAGAAAGGAAACCAGATTTAAAAG CTGAGCGAGAAGCAGTTAATGCAGCAGAAAGAGCTGAGAGAAAACTTCAGCEST: gi|161720775|gb|FC070283.1|FC070283
genomic: AGTTAATAGATTGAACAGGACAAAAGTAGAAAGGAAACCAGATTTAAAAGgtaatcttgc ... ttaactgcagCTGAGCGAGAAGCAGTTAATGCAGCAGAAAGAGCTGAGAGAAAACTTCAGC
EST: AGTTAATAGATTGAACAGGACAAAAGTAGAAAGGAAACCAGATTTAAAAG CTGAGCGAGAAGCAGTTAATGCAGCAGAAAGAGCTGAGAGAAAACTTCAGCEST: gi|34549359|gb|CF517591.1|CF517591
genomic: AGTTAATAGATTGAACAGGACAAAAGTAGAAAGGAAACCAGATTTAAAAGgtaatcttgc ... ttaactgcagCTGAGCGAGAAGCAGTTAATGCAGCAGAAAGAGCTGAGAGAAAACTTCAGC
EST: AGTTAATAGATTGAACAGGACAAAAGTAGAAAGGAAACCAGATTTAAAAG CTGAGCGAGAAGCAGTTAATGCAGCAGAAAGAGCTGAGAGAAAACTTCAGCEST: gi|110715789|gb|EE094238.1|EE094238
genomic: AGTTAATAGATTGAACAGGACAAAAGTAGAAAGGAAACCAGATTTAAAAGgtaatcttgc ... ttaactgcagCTGAGCGAGAAGCAGTTAATGCAGCAGAAAGAGCTGAGAGAAAACTTCAGC
EST: AGTTAATAGATTGAACAGGACAAAAGTAGAAAGGAAACCAGATTTAAAAG CTGAGCGAGAAGCAGTTAATGCAGCAGAAAGAGCTGAGAGAAAACTTCAGCEST: gi|110383971|gb|EC948380.1|EC948380
genomic: AGTTAATAGATTGAACAGGACAAAAGTAGAAAGGAAACCAGATTTAAAAGgtaatcttgc ... ttaactgcagCTGAGCGAGAAGCAGTTAATGCAGCAGAAAGAGCTGAGAGAAAACTTCAGC
EST: AGTTAATAGATTGAACAGGACAAAAGTAGAAAGGAAACCAGATTTAAAAG CTGAGCGAGAAGCAGTTAATGCAGCAGAAAGAGCTGAGAGAAAACTTCAGCEST: gi|110710049|gb|EE086042.1|EE086042
genomic: AGTTAATAGATTGAACAGGACAAAAGTAGAAAGGAAACCAGATTTAAAAGgtaatcttgc ... ttaactgcagCTGAGCGAGAAGCAGTTAATGCAGCAGAAAGAGCTGAGAGAAAACTTCAGC
EST: AGTTAATAGATTGAACAGGACAAAAGTAGAAAGGAAACCAGATTTAAAAG CTGAGCGAGAAGCAGTTAATGCAGCAGAAAGAGCTGAGAGAAAACTTCAGCEST: gi|30128520|gb|CB913859.1|CB913859
genomic: AGTTAATAGATTGAACAGGACAAAAGTAGAAAGGAAACCAGATTTAAAAGgtaatcttgc ... ttaactgcagCTGAGCGAGAAGCAGTTAATGCAGCAGAAAGAGCTGAGAGAAAACTTCAGC
EST: AGTTAATAGATTGAACAGGACAAAAGTAGAAAGGAAACCAGATTTAAAAG CTGAGCGAGAAGCAGTTAATGCAGCAGAAAGAGCTGAGAGAAAACTTCAGCEST: gi|161721392|gb|FC070768.1|FC070768
genomic: AGTTAATAGATTGAACAGGACAAAAGTAGAAAGGAAACCAGATTTAAAAGgtaatcttgc ... ttaactgcagCTGAGCGAGAAGCAGTTAATGCAGCAGAAAGAGCTGAGAGAAAACTTCAGC
EST: AGTTAATAGATTGAACAGGACAAAAGTAGAAAGGAAACCAGATTTAAAAG CTGAGCGAGAAGCAGTTAATGCAGCAGAAAGAGCTGAGAGAAAACTTCAGCEST: gi|110357353|gb|EC920834.1|EC920834
genomic: AGTTAATAGATTGAACAGGACAAAAGTAGAAAGGAAACCAGATTTAAAAGgtaatcttgc ... ttaactgcagCTGAGCGAGAAGCAGTTAATGCAGCAGAAAGAGCTGAGAGAAAACTTCAGC
EST: AGTTAATAGATTGAACAGGACAAAAGTAGAAAGGAAACCAGATTTAAAAG CTGAGCGAGAAGCAGTTAATGCAGCAGAAAGAGCTGAGAGAAAACTTCAGCEST: gi|110374937|gb|EC939883.1|EC939883
genomic: AGTTAATAGATTGAACAGGACAAAAGTAGAAAGGAAACCAGATTTAAAAGgtaatcttgc ... ttaactgcagCTGAGCGAGAAGCAGTTAATGCAGCAGAAAGAGCTGAGAGAAAACTTCAGC
EST: AGTTAATAGATTGAACAGGACAAAAGTAGAAAGGAAACCAGATTTAAAAG CTGAGCGAGAAGCAGTTAATGCAGCAGAAAGAGCTGAGAGAAAACTTCAGCEST: gi|27583079|gb|CB005774.1|CB005774
genomic: AGTTAATAGATTGAACAGGACAAAAGTAGAAAGGAAACCAGATTTAAAAGgtaatcttgc ... ttaactgcagCTGAGCGAGAAGCAGTTAATGCAGCAGAAAGAGCTGAGAGAAAACTTCAGC
EST: AGTTAATAGATTGAACAGGACAAAAGTAGAAAGGAAACCAGATTTAAAAG CTGAGCGAGAAGCAGTTAATGCAGCAGAAAGAGCTGAGAGAAAACTTCAGC
genomic: AGTTAATAGATTGAACAGGACAAAAGTAGAAAGGAAACCAGATTTAAAAGgtaatcttgc ... ttaactgcagCTGAGCGAGAAGCAGTTAATGCAGCAGAAAGAGCTGAGAGAAAACTTCAGC
tctaattctgccttgatggtgttacaagtcgctgatgcatgatatttaactgcagCTGAGCGAGAAGCAGTTAATGCAGCAGAAAGAGCTGAGAGAAAACTTCAGCTGAGAGATAAA
atgatatttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagcaaagtatattatttctgatggttttcaatattaatcttttctaattctgccttgatggtgttacaagtcgctgatgcatgatatttaactgcagCTGAGCGAGAAGCAGTTAATGCAGCAGAAAGAGCTGAGAGAAAACTTCAGCTGAGAGATAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
gcaagca
- - - - - - - - - - ctgatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgat