1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttattctcttacagaggggtctatgagtgaggtacttggtcttagtcatgcacatgaggcctggaccactcttgaagcctctttttctcacagatccaagACTCGAGAACTCCAACTCAAGGATGATCTTCAATTGATGTAG
species | Vitis vinifera |
transcript | Vv03s0110g00170.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
tcatgcacatgaggcctggaccactcttgaagcctctttttctcacagatccaagACTCGAGAACTCCAACTCAAGGATGATCTTCAATTGATGTAG
ttctcac putative branch site (score: 2)
cctctttttctcac CT-rich tract
tcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttattctcttacagaggggtctatgagtgaggtacttggtcttagtcatgcacatgaggcctggaccactcttgaagcctctttttctcacagatccaagACTCGAGAACTCCAACTCAAGGATGATCTTCAATTGATGTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - ctatgag
- - - - - - - - - - - - - - - - tacttgg
- - - - - - - - - - - - - - - - - - - - - - - catgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggcctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccactct