1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gagactgtccttatttgcctgtttgtacgttacgtttattcagttcttccaatgattctttcttttgttaaatgaataatgcaaattgattttgtttcagGAAATTGGGCTGCCAAATACTGCTGACACTGATCCTGAGACTGAAGAGCACACAACTGTTGAAGATAACAATCCTGGGAGAAATGGGGCATTATCTCTTC
species | Vitis vinifera |
transcript | Vv03s0038g02570.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGGAAACTGTAAATGATGATGAAATGGATGCCCTTGAGAATGCTAAAGAG GAAATTGGGCTGCCAAATACTGCTGACACTGATCCTGAGACTGAAGAGCACEST: gi|110392926|gb|EC957567.1|EC957567
genomic: GGGAAACTGTAAATGATGATGAAATGGATGCCCTTGAGAATGCTAAAGAGgttagtttct ... tttgtttcagGAAATTGGGCTGCCAAATACTGCTGACACTGATCCTGAGACTGAAGAGCAC
EST: GGGAAACTGTAAATGATGATGAAATGGATGCCCTTGAGAATGCTAAAGAG GAAATTGGGCTGCCAAATACTGCTGACACTGATCCTGAGACTGAAGAGCAC
genomic: GGGAAACTGTAAATGATGATGAAATGGATGCCCTTGAGAATGCTAAAGAGgttagtttct ... tttgtttcagGAAATTGGGCTGCCAAATACTGCTGACACTGATCCTGAGACTGAAGAGCAC
cttccaatgattctttcttttgttaaatgaataatgcaaattgattttgtttcagGAAATTGGGCTGCCAAATACTGCTGACACTGATCCTGAGACTGAAGAGCACACAACTGTTGAAGATAACAATCCTGGGAGAAATGGGGCATTATCTCTTC
aattgat putative branch site (score: 4)
ttttgtttc CT-rich tract
tttcttttgttaaatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagactgtccttatttgcctgtttgtacgttacgtttattcagttcttccaatgattctttcttttgttaaatgaataatgcaaattgattttgtttcagGAAATTGGGCTGCCAAATACTGCTGACACTGATCCTGAGACTGAAGAGCACACAACTGTTGAAGATAACAATCCTGGGAGAAATGGGGCATTATCTCTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - -tgcctgt
- - - - - - - - - - - - - - - - - - - - - - -cttccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgcaa