Sequence
atgc intronic sequence ATGC exonic sequencegtaggtagttaccttggaatttttctatttttatctttttctcatactcttccaaatatgtccaaaaaaataaataacccacactctaattcttgcagGGTACCTGATTCCAAAAGGGTGGAAAGTTTTACCACTTTTCAGAAACATTCACCACAGTCCAGACATATATCCAGAGCCAGAGAAGTTTGATCCCTCAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0087g00710.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA16G20490.1 (Glycine max), 3'ss of exon 4
-------------------gtaggtagttaccttggaatttttctatttttatc------tttttctcatactcttccaaatatgtccaaaaaaataaataacccacactctaattcttgcagGGTACCTGATTCCAAAAGGGTGGAAAGTTTTACCACTTTTCAGAAACATTCACCACAGTCCAGACATATATCCAGAGCCAGAGAAGTTTGATCCCTCAAG
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gtcaataaccaaatctgataaagataccctcttttcattattaataatatgccagaaggattcctctcttttccttgtttgtgattttgtgttggggactacttttttattttttttattcagGGTATCTCATACCAAAAGGGTGGAAAGTATTACCACTTTTTAGAAACATCCACCATAGTCCTGACAACTTCAAAGAGCCAGAGAAGTTTGATCCTTCAAG
upper sequence: Vv02s0087g00710.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA16G08340.1 (Glycine max), 3'ss of exon 4
--------------gtaggtagttaccttggaatttttctatttttatct--------ttttctcatactcttccaaatat--gtccaaaaaaataaataacccacactctaattcttgcagGGTACCTGATTCCAAAAGGGTGGAAAGTTTTACCACTTTTCAGAAACATTCACCACAGTCCAGACATATATCCAGAGCCAGAGAAGTTTGATCCCTCAAG
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gtcaataaccaaatctgaatagataccccttttcattattaataatatgtcaaagaattcctcttattttttttctgattttaatttgtgttgtgttggggactactttttttcttcttcagGGTATCTCATACCAAAAAGATGGAAAGTATTACCCCTTTTTAGAAACATCCACCACAGTCCAGACAACTTCAAAGAGCCAGAGAAGTTTGATCCTTCAAG
upper sequence: Vv02s0087g00710.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA17G14310.1 (Glycine max), 3'ss of exon 4
----gtaggta-gttaccttggaat----ttttctatttttatctttttctcatactcttccaaatatgtccaaaaaaataaat--aacccacactctaattctt-gcagGGTACCTGATTCCAAAAGGGTGGAAAGTTTTACCACTTTTCAGAAACATTCACCACAGTCCAGACATATATCCAGAGCCAGAGAAGTTTGATCCCTCAAG
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gtcaataaccaagatatgataatatacccctttttattattaatatgccaaagaattcctctcctttttttctggtttttgattttgtgttggggtctacttttccgcagGGCATCTCATACCAAAAGGGTGGAAAGTATTACCGCTTTTTAGAATCATCCACCATAGTCCTGACAATTTTAAAGAGCCAGAGAAGTTTGATCCTTCAAG
upper sequence: Vv02s0087g00710.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA05G03800.1 (Glycine max), 3'ss of exon 5
gtaggtagttaccttggaatttttctatttttatctttttctcatactcttccaaat--atgtcca--aaaaaataaataacccacact-----ctaattct-tgcagGGTACCTGATTCCAAAAGGGTGGAAAGTTTTACCACTTTTCAGAAACATTCACCACAGTCCAGACATATATCCAGAGCCAGAGAAGTTTGATCCCTCAAG
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gtcaataaccaaaatatgataaga-tacccctttctattattaatatgccaaagagttcatgtccttttattgtttgtgattttgtgttggggactacttttctttagGGTATCTCATACCAGAAGGGTGGAAAGTATTACCACTTTTTAGAAACATCCACCATAGGCCTGACAACTTCAAAGAGCCAGAGAAGTTTGATCCTTCAAG
upper sequence: Vv02s0087g00710.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA01G35660.2 (Glycine max), 3'ss of exon 3
-gtaggtagttaccttggaat--ttttctatttttatctttt-----------tctcatactcttccaaatatgtccaaaaaaataaataacccacactctaattcttgcagGGTACCTGATTCCAAAAGGGTGGAAAGTTTTACCACTTTTCAGAAACATTCACCACAGTCCAGACATATATCCAGAGCCAGAGAAGTTTGATCCCTCAAG
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gtcaattaccaaatctgatatgataccttatttttaatttttaacacaaggtctcctttccttttctcacttaagctcacagattctatgttggttattgttcttctt-tagGGTATCTTATTCCAAAAGGGTGGAAAGTGCTACCTCTATTTAGGAACATACACCACAGTCCAGACAACTTCAAGGAGCCAGAAAAATTTGATCCCTCAAG
upper sequence: Vv02s0087g00710.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA09G35250.1 (Glycine max), 3'ss of exon 4
gtaggtagttaccttggaatttttctatttttatctttttctc-atactcttccaaatatgtccaaaaaaataaataacccacactctaattcttgcagGGTACCTGATTCCAAAAGGGTGGAAAGTTTTACCACTTTTCAGAAACATTCACCACAGTCCAGACATATATCCAGAGCCAGAGAAGTTTGATCCCTCAAG
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gtcaataatcaaatctgatatttttagttaatttttaacccaagatctcctttccttttttttctcacagattctatgttggtaattgtttttctatagGGTATCTTATTCCAAAAGGGTGGAAAGTGCTACCTCTATTTAGGAACATACACCACAGTCCAGACAACTTCAAGGAGCCAGAAAAATTTGATCCCTCAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atactcttccaaatatgtccaaaaaaataaataacccacactctaattcttgcagGGTACCTGATTCCAAAAGGGTGGAAAGTTTTACCACTTTTCAGAAACATTCACCACAGTCCAGACATATATCCAGAGCCAGAGAAGTTTGATCCCTCAAG
ttcttgc CT-rich tract
aaatatgtccaaaaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaggtagttaccttggaatttttctatttttatctttttctcatactcttccaaatatgtccaaaaaaataaataacccacactctaattcttgcagGGTACCTGATTCCAAAAGGGTGGAAAGTTTTACCACTTTTCAGAAACATTCACCACAGTCCAGACATATATCCAGAGCCAGAGAAGTTTGATCCCTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT