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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccactcaaaatcgccaattggcatagctcttcttgttgatgtaatctttgagattctcccaagctctaatctccattccaacatccagACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCT

Basic information

species Vitis vinifera
transcript Vv02s0087g00400.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0087g00400.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA09G35050.4 (Glycine max), 3'ss of exon 4
gtaccactcaaaatcgccaattggcatagctct--tcttgttgatgtaatctttgagattctcccaagctctaatctccattccaacatccagACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCT
       ||     | | | |   || |  | |  |  |  | ||| ||||    |  ||||   |   ||||||    |||   |  |||||| ||||||||||||||||  |||||||||||||| || |||||  | || ||||| || ||||| ||||||||  |||| 
------gtctttcccactagtccacacaattttgtttctcctaatg-aatccaatattttctttaactttctaatgagtattgtgaattccagATTTCTACAACTGGAACAGAATCAAGGTTAGGTATTGTGATGGTTCATCATTTACTGGTGATGTGGAAGCAGTGAATCCA

upper sequence: Vv02s0087g00400.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA01G35480.2 (Glycine max), 3'ss of exon 4
gtaccactcaaaatcgccaattggcatagctcttcttgttgatgtaatctttgagattctcccaagctctaatctccattccaacatccagACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCT
       ||     | ||| |   ||    | || ||  | ||| ||||    |  || |   |  |||||||     ||   |  |||||| ||||||||||||||||  |||||||||||||| || |||||  | || ||||| || ||||| ||||||||  |||| 
------gtctttcccaccactcaacaatcttgtttttcctaatg-aatccaacattttgtttaattctctaataagtgttgtgaattccagATTTCTACAACTGGAACAGAATCAAGGTTAGGTATTGTGATGGTTCGTCATTTACTGGTGATGTGGAAGCAGTGAATCCG

upper sequence: Vv02s0087g00400.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA16G17150.1 (Glycine max), 3'ss of exon 4
gtaccactcaaaatcgccaattggcatagctcttcttgttgatgtaatctttgagattctcccaagc--tctaatctccattccaacatccagACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCT
       |   |    | |||    |||    ||||  || ||| ||   |    ||| | |  |||  |||||      ||  ||  | |||| |||||||| ||||| |   |||||||||||||||| |||||| | || ||||| || ||||| |||| ||||||||  
------gtattatcttctaatctatatattgtttctcctt-atg-aactctaacaattttgcttagctttctaacgatttttataaacttcagATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37184751|gb|CF604105.1|CF604105
EST:     GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGG                         ACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGG
genomic: GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGGgtaccactca ... caacatccagACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGG
EST: gi|71856065|gb|DT005120.1|DT005120
EST:     GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGG                         ACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
genomic: GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGGgtaccactca ... caacatccagACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
EST: gi|110719772|gb|EE095190.1|EE095190
EST:     GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGG                         ACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
genomic: GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGGgtaccactca ... caacatccagACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
EST: gi|22010091|gb|BQ795125.1|BQ795125
EST:     GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGG                         ACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
genomic: GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGGgtaccactca ... caacatccagACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
EST: gi|294964082|gb|GW837885.1|GW837885
EST:     GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGG                         ACTTCTACAACTGGAAACAAGATCAAGGTTAGGTACTGTGATGGGGCCTCC
genomic: GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGGgtaccactca ... caacatccagACTTCTACAACTGGAA-CAAGATCAAGGTTAGGTACTGCGATGGGGCCTCC
EST: gi|352768101|gb|FQ467240.1|FQ467240
EST:     GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGG                         ACTTCTACAACTGGAAGAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
genomic: GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGGgtaccactca ... caacatccagACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
EST: gi|37184707|gb|CF604061.1|CF604061
EST:     GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGG                         ACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
genomic: GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGGgtaccactca ... caacatccagACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
EST: gi|110698014|gb|EE075544.1|EE075544
EST:     GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGG                         ACTTCTACAACTGGAACAAGATCAAGGTTAGGTAGTGCGAGGGGGCCTCCT
genomic: GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGGgtaccactca ... caacatccagACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
EST: gi|110375405|gb|EC940389.1|EC940389
EST:     GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGG                         ACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
genomic: GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGGgtaccactca ... caacatccagACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
EST: gi|110685994|gb|EE063201.1|EE063201
EST:     GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGG                         ACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
genomic: GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGGgtaccactca ... caacatccagACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
EST: gi|110687331|gb|EE064646.1|EE064646
EST:     GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGG                         ACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
genomic: GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGGgtaccactca ... caacatccagACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
EST: gi|110701053|gb|EE078256.1|EE078256
EST:     GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGG                         ACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
genomic: GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGGgtaccactca ... caacatccagACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
EST: gi|28968205|gb|CB347238.1|CB347238
EST:     GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGG                         ACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
genomic: GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGGgtaccactca ... caacatccagACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
EST: gi|30322666|gb|CD005928.1|CD005928
EST:     GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGG                         ACTTCTACAACTGGAACAAGATCAAGGNTAGGTACTGCGATGGGGCCTCCT
genomic: GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGGgtaccactca ... caacatccagACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
EST: gi|110698866|gb|EE076852.1|EE076852
EST:     GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGG                         ACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
genomic: GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGGgtaccactca ... caacatccagACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
EST: gi|33410293|gb|CF215920.1|CF215920
EST:     GCAAATTACTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGG                         ACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
genomic: GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGGgtaccactca ... caacatccagACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
EST: gi|37183780|gb|CF603134.1|CF603134
EST:     GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGG                         ACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
genomic: GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGGgtaccactca ... caacatccagACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
EST: gi|352782414|gb|FQ470317.1|FQ470317
EST:     GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGG                         ACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
genomic: GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGGgtaccactca ... caacatccagACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
EST: gi|352767915|gb|FQ466124.1|FQ466124
EST:     GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGG                         ACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
genomic: GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGGgtaccactca ... caacatccagACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
EST: gi|110720782|gb|EE097004.1|EE097004
EST:     GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGG                         ACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
genomic: GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGGgtaccactca ... caacatccagACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
EST: gi|110701134|gb|EE078400.1|EE078400
EST:     GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGG                         ACTTCTACAACTGTAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
genomic: GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGGgtaccactca ... caacatccagACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
EST: gi|30322537|gb|CD005799.1|CD005799
EST:     GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGG                         ACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
genomic: GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGGgtaccactca ... caacatccagACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
EST: gi|110728091|gb|EE103366.1|EE103366
EST:     GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGG                         ACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
genomic: GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGGgtaccactca ... caacatccagACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
EST: gi|71858006|gb|DT007061.1|DT007061
EST:     GCAAATTGCTTTCTCTGGGATTCTGAGCAACAGGCAAAAATTTAATCCGG                         ACTTCTACAACTG
genomic: GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGGgtaccactca ... caacatccagACTTCTACAACTG
EST: gi|352764078|gb|FQ467648.1|FQ467648
EST:     GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGG                         ACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
genomic: GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGGgtaccactca ... caacatccagACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
EST: gi|110698827|gb|EE076773.1|EE076773
EST:     GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGG                         ACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
genomic: GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGGgtaccactca ... caacatccagACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
EST: gi|352781577|gb|FQ468875.1|FQ468875
EST:     GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGG                         ACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
genomic: GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGGgtaccactca ... caacatccagACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
EST: gi|110698396|gb|EE075846.1|EE075846
EST:     GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGG                         ACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
genomic: GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGGgtaccactca ... caacatccagACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
EST: gi|110710999|gb|EE087696.1|EE087696
EST:     GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGG                         ACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
genomic: GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGGgtaccactca ... caacatccagACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
EST: gi|71856420|gb|DT005475.1|DT005475
EST:     GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGG                         ACTTCTACAACTGGAACAAGATCA
genomic: GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGGgtaccactca ... caacatccagACTTCTACAACTGGAACAAGATCA
EST: gi|32458466|gb|CD799640.1|CD799640
EST:     GCAAATTGCTTTTTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGG                         ACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
genomic: GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGGgtaccactca ... caacatccagACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
EST: gi|37188407|gb|CF607756.1|CF607756
EST:     GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGG                         ACTTCTACAACTGGAACAAG
genomic: GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGGgtaccactca ... caacatccagACTTCTACAACTGGAACAAG
EST: gi|33408383|gb|CF214010.1|CF214010
EST:     GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGG                         ACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
genomic: GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGGgtaccactca ... caacatccagACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
EST: gi|294964094|gb|GW837897.1|GW837897
EST:     GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGG                         ACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
genomic: GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGGgtaccactca ... caacatccagACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
EST: gi|161714707|gb|FC062675.1|FC062675
EST:     GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGG                         ACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
genomic: GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGGgtaccactca ... caacatccagACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
EST: gi|110698242|gb|EE075557.1|EE075557
EST:     GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGG                         ACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
genomic: GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGGgtaccactca ... caacatccagACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
EST: gi|110721907|gb|EE097675.1|EE097675
EST:     GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGG                         ACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
genomic: GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGGgtaccactca ... caacatccagACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
EST: gi|110730159|gb|EE106923.1|EE106923
EST:     GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGG                         ACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
genomic: GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGGgtaccactca ... caacatccagACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
EST: gi|18458990|gb|BM437268.1|BM437268
EST:     GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGG                         ACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
genomic: GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGGgtaccactca ... caacatccagACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
EST: gi|34548179|gb|CF516411.1|CF516411
EST:     GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGG                         ACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
genomic: GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGGgtaccactca ... caacatccagACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
EST: gi|110690730|gb|EE068155.1|EE068155
EST:     GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGG                         ACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
genomic: GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGGgtaccactca ... caacatccagACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
EST: gi|352778255|gb|FQ465565.1|FQ465565
EST:     GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGG                         ACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT
genomic: GCAAATTGCTTTCTCTGGGATTCTGAGCAACAAGCAAAAATTTAATCCGGgtaccactca ... caacatccagACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttgatgtaatctttgagattctcccaagctctaatctccattccaacatccagACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCT
                              ctctaat  putative branch site (score: 3)
                                    tctccattcc  CT-rich tract
        taatcttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaccactcaaaatcgccaattggcatagctcttcttgttgatgtaatctttgagattctcccaagctctaatctccattccaacatccagACTTCTACAACTGGAACAAGATCAAGGTTAGGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC