Sequence
atgc intronic sequence ATGC exonic sequence...ttttagagtttgatatgtcaaactgttgacaatctactatgtgtgctctggtcatatttggcgtatcatggaactgaaattttttcacatgattgtacagGTGACCGCAGGGATCAGAAAACTCTAGAGCGCCTTCGAGCCGAAAGACGAGCAAAAATTGATGAACTCAAAGAGAGGACAAATTATTATACCACACAACA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0033g01150.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os04g44180.1 (Oryza sativa), 3'ss of exon 2
ttttagagtttgatatgt-caaactgttgacaatctacta-tgtgtgctctggtcatatttggcgt-atcatggaactga-aattttttcacatgattgtacagGTGACCGCAGGGATCAGAAAACTCTAGAGCGCCTTCGAGCCGAAAGACGAGCAAAAATTGATGAACTCAAAGAGAGGACAAATTATTATACCACACAACA
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----taaatctaacgtggacatgcaattggacatttcttagtttgggacccatcaacaataggctttgttagtgtactaataacctttttgcctctgtacacagTGGAGCAGAAGGATCAGAAGTTGCTTGAAAGATTGAGAGAGGAGAGAAAAGCTAAGATTGATGAACTGAAAGAGAGAACAAATTATTATCTCACCCAGAA
upper sequence: Vv02s0033g01150.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA04G07860.1 (Glycine max), 3'ss of exon 3
-ttttagagtttgata-tgtcaaactgttgacaatctactatgtgtgctctggtcatatttggcgtatcatggaactgaaatttttt-cacatgattgtacagGTGACCGCAGGGATCAGAAAACTCTAGAGCGCCTTCGAGCCGAAAGACGAGCAAAAATTGATGAACTCAAAGAGAGGACAAATTATTATACCACACAACA
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tttggacaggcaactagtgcttagagttttataattta-tatgccaagtgaaaataaaattccctttt--tgaatttataatttataatttgtgattttatagGTGATTGCAGGGATCAGAAAATTCTTGAAAGGCTTCGAGCTGAAAGGCAAGAAAAAATTGATGAGCTCAAAGAAAGGACAAATTATTACACTACACAACA
upper sequence: Vv02s0033g01150.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA06G07930.1 (Glycine max), 3'ss of exon 3
ttttagagtttgatatgtcaaactgttgacaatctactatgtgtgctctgg---tcatatttggcgtatca--tggaactgaaattttttcac-----------atgattgtacagGTGACCGCAGGGATCAGAAAACTCTAGAGCGCCTTCGAGCCGAAAGACGAGCAAAAATTGATGAACTCAAAGAGAGGACAAATTATTATACCACACAACA
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--------------atgcacaccttttgg--accggcaactagtgcttagagttttataatttatatgccaagtgaaaataaaattcccttactttttgaatttgtgattttatagGTGATCGCAGGGATAAGAAAATTCTTGAAAGGCTTCGAGCTGAAAGGCAAGAAAAAATTGATGAGCTCAAAGAAAGGACAAATTATTACACTACACAACA
upper sequence: Vv02s0033g01150.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA14G17080.1 (Glycine max), 3'ss of exon 2
---ttttagagtttgatatgtcaaactgttgacaatctactatgtg-tgctctggtcatatttggcgtatcatggaactgaaattttttcac-atgattgtacagGTGACCGCAGGGATCAGAAAACTCTAGAGCGCCTTCGAGCCGAAAGACGAGCAAAAATTGATGAACTCAAAGAGAGGACAAATTATTATACCACACAACA
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atcattcacaacccca-gtgataagct----agaatttagagtttgatatatcgagtacaaaattaatattatttaattttaaatataaaattgtggttttatagGTGATCGCAGGGACCAGAAAATTCTTGAAAGTCTTAGAGCTGAAAGGAAGGCAAAAATTGATGAGCTCAAAGAGAAGACAAATTATTACATTACTCAACA
upper sequence: Vv02s0033g01150.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA17G29620.1 (Glycine max), 3'ss of exon 2
ttttagagtttgatatgtcaaactgttgacaatctactatg-tgtgctctggtcatatttggcgtatcatggaactgaaattttttcacatgattgtacagGTGACCGCAGGGATCAGAAAACTCTAGAGCGCCTTCGAGCCGAAAGACGAGCAAAAATTGATGAACTCAAAGAGAGGACAAATTATTATACCACACAACA
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ctatcatgcacaacccagtgataagctagtatttagatttgatatgccaagtgcaaaaatgatat-tatttaattttaaatataaaattgtggttttatagGTGATCGCAAGGACCAGAAAATTCTTGAAAGTCTTAGAGCTGAAAGGAAGGCAAAAATTGATGAGCTCAAAGAGAAGACAAATTATTACATTACTCAACA
upper sequence: Vv02s0033g01150.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT4G31080.2 (Arabidopsis thaliana), 3'ss of exon 3
----ttttagagtttgatatgtcaaactgttgacaatctactatgtgtgctctggtcatatttggcgtatcatggaactgaaattttttcacatgattgtacagGTGACCGCAGGGATCAGAAAACTCTAGAGCGCCTTCGAGCCGAAAGACGAGCAAAAATTGATGAACTCAAAGAGAGGACAAATTATTATACCACACAACA
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gtgagtcttgtgttt-atatgctcatttcatgttaagatgttg-gtgtgttctcgtagcttctc-tgtttc-taattctg-----tgtaaaaatggttgtatagTTGACCGCAGAGATCAAAAGACCTTGGAAAAGCTTCGAGCTGAAAGGTTGGCGAAAATCAATGAACTTAAAGAAAGGACCAATTATTATACCACACAACAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161714289|gb|FC064174.1|FC064174EST: TGGTTTGTCTTCTGCTGCTTATTCAGTGATTGTAAGCCTCACAAGAATGT GTGACCGCAGGGATCAGAAAACTCTAGAGCGCCTTCGAGTCGAAAGACGAG
genomic: TGGTTTGTCTTCTGCTGCTTATTCAGTGATTGTAAGCCTCACAAGAATGTgtaagtatct ... gattgtacagGTGACCGCAGGGATCAGAAAACTCTAGAGCGCCTTCGAGCCGAAAGACGAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctctggtcatatttggcgtatcatggaactgaaattttttcacatgattgtacagGTGACCGCAGGGATCAGAAAACTCTAGAGCGCCTTCGAGCCGAAAGACGAGCAAAAATTGATGAACTCAAAGAGAGGACAAATTATTATACCACACAACA
aactgaaatttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttttagagtttgatatgtcaaactgttgacaatctactatgtgtgctctggtcatatttggcgtatcatggaactgaaattttttcacatgattgtacagGTGACCGCAGGGATCAGAAAACTCTAGAGCGCCTTCGAGCCGAAAGACGAGCAAAAATTGATGAACTCAAAGAGAGGACAAATTATTATACCACACAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - -tcaaact
- - - - - - - - - - - - - - - - - - - -tgtgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catggaa