Sequence
atgc intronic sequence ATGC exonic sequencegtatgaatgcgggcatcagtttcaggacatctgacttatatatgattatgatctcactgctattatccatggcttcattccactgcagGCTTCAGGCAACATCGTCGCAATGGTTGGAGACGGCATTAATGATTCACCAGCTCTTGCAGCTGCAGATGTTGGTATGGCAATTGGTGCAGGCACAGACA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0025g03640.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA01G42800.1 (Glycine max), 3'ss of exon 5
-----------------------------gtatgaatgcgggcatcagtttcaggacat--ctgacttatatatg-attatgatctcactgctattatccatggc-ttcattccactgcagGCTTCAGGCAACATCGTCGCAATGGTTGGAGACGGCATTAATGATTCACCAGCTCTTGCAGCTGCAGATGTTGGTATGGCAATTGGTGCAGGCACAGACA
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gtataacaaaatcaaatgatgacatattgatatttttcttaaaatatgtaacaaaattttattaaaatatgcacgtgtgattagttgaataatgtttcaagtgacatatatataatggcagAGTTCTGGGTACACGGTGGCAATGGTGGGAGATGGAATAAACGATTCACCAGCACTAGTGGCTGCTGATGTAGGAATGGCAATTGGTGCTGGCACAGACA
upper sequence: Vv02s0025g03640.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA05G37920.1 (Glycine max), 3'ss of exon 3
----------------------------------------------------------------------------gtatgaatgcgggcatcagtttcaggacatctgacttatatatgat-tatgatctcactgctattatccatggcttcattccactgc-agGCTTCAGGCAACATCGTCGCAATGGTTGGAGACGGCATTAATGATTCACCAGCTCTTGCAGCTGCAGATGTTGGTATGGCAATTGGTGCAGGCACAGACA---
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gtatagaaaacgtgtgtcgttcaatcttcatccaatcataagcaaaattctgattagatgtctaatattttacactgaaagtgtatataaattaaactcagtttatactacatctctaacatatattacat-gtggttaacatattgagtacccttttcttgttagGCTTCTGGGTACAGGGGC---ATGGTGGGGGATGGTATCAATGATTCACCAGCACTTGTGGCAGCAGATGTAGGAATGGCAATTGGTGCTGGTACAGACATTG
upper sequence: Vv02s0025g03640.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA19G32190.1 (Glycine max), 3'ss of exon 6
---------gtatgaatgcgggcatcagtttcaggac--atctgacttatatatgat-tatgatctcactgctattatccatggcttcattccactgc-agGCTTCAGGCAACATCGTCGCAATGGTTGGAGACGGCATTAATGATTCACCAGCTCTTGCAGCTGCAGATGTTGGTATGGCAATTGGTGCAGGCACAGACA
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ttttacactgaaagtgtatataaattaaactcatacttaatcctacatctctaacatatattacct-gtggttaacatattgagtaccctttttttgttagGCTTCTGGGTGCAGGGTGGCTATGGTGGGGGATGGTATCAATGACTCACCAGCACTTGTGGCAGCAGATGTAGGAATGGCAATTGGTGCTGGTACAGACAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161719860|gb|FC065772.1|FC065772EST: TTGCTGAAGCCAAACCTGAGCAGAAAGCAGAAAAAGTGAAGGATTTACAG GCTTCAGGCAACATCGTCGCAATGGTTGGAGACGGCATTAATGATTCACCA
genomic: TTGCTGAAGCCAAACCTGAGCAGAAAGCAGAAAAAGTGAAGGATTTACAGgtatgaatgc ... tccactgcagGCTTCAGGCAACATCGTCGCAATGGTTGGAGACGGCATTAATGATTCACCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acttatatatgattatgatctcactgctattatccatggcttcattccactgcagGCTTCAGGCAACATCGTCGCAATGGTTGGAGACGGCATTAATGATTCACCAGCTCTTGCAGCTGCAGATGTTGGTATGGCAATTGGTGCAGGCACAGACA
atctcac putative branch site (score: 3)
cttcattcc putative PPT
tatatgattatgat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgaatgcgggcatcagtttcaggacatctgacttatatatgattatgatctcactgctattatccatggcttcattccactgcagGCTTCAGGCAACATCGTCGCAATGGTTGGAGACGGCATTAATGATTCACCAGCTCTTGCAGCTGCAGATGTTGGTATGGCAATTGGTGCAGGCACAGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG