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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgatgctttttgctgcttttgggtggagattatttcattactttaaacagaattaggttactgaaaaaggatttacatatgaagGTTGTTGACTGCCGTGTATGCGGTGACCCTAACTCAGTTCTGCGTTTTGCTTTTGTTGAGTTTACTGATGAAG

Basic information

species Vitis vinifera
transcript Vv02s0025g02740.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g02740.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: PP1S62_224V6.1 (Physcomitrella patens), 3'ss of exon 3
----gtattgatgct-------ttttgctgcttttgggtggagattatttcat---tactttaaacagaattaggttactgaaaaaggatttacatatgaagGTTGTTGACTGCCGTGTATGCGGTGACCCTAACTCAGTTCTGCGTTTTGCTTTTGTTGAGTTTACTGATGAAG
     || | | |||       | || |    |  ||    | | || | | |   || |    ||||  ||| | |||     |  |  ||   |    ||||||| || ||||||||||| |||||||| ||||| || || || ||||||||||| || || ||||| ||||
tatgatagttaagctaccaaaatattacgagatcaggaataaaactagtacgtgtgtagtgcctacagggttatgatacaagttactgtgtt--gtgctcagGTTGTGGATTGCCGTGTATGTGGTGACCCAAACTCTGTGCTCCGATTTGCTTTTGTGGAATTCACTGACGAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatttcattactttaaacagaattaggttactgaaaaaggatttacatatgaagGTTGTTGACTGCCGTGTATGCGGTGACCCTAACTCAGTTCTGCGTTTTGCTTTTGTTGAGTTTACTGATGAAG
            tttaaacagaatta  TA-rich tract