1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aaatgccagcatattctttgggagaatggtagtttatcttctgtgctgaatcatttcatttctgaagcaatttatttaattcagttacacaatatttcagGGCATGAGTGGAACAATTCGGGATGAAACACTGCTGCAACTAAAAGTTCCTATAATGTTTGTACAG
species | Vitis vinifera |
transcript | Vv02s0025g01290.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGGAAGAGATTGGTGCTTCAGCAGTAGTTTGCTTGGGATATCCGCTGAAG GGCATGAGTGGAACAATTCGGGATGAAACACTGCTGCAACTAAAAGTTCCTEST: gi|27582736|gb|CB005431.1|CB005431
genomic: GGGAAGAGATTGGTGCTTCAGCAGTAGTTTGCTTGGGATATCCGCTGAAGgttttctata ... aatatttcagGGCATGAGTGGAACAATTCGGGATGAAACACTGCTGCAACTAAAAGTTCCT
EST: GGGAAGAGATTGGTGCTTCAGCAGTAGTTTGCTTGGGATATCCGCTGAAG GGCATGAGTGGAACAATTCGGGATGAAACACTGCTGCAACTAAAAGTTCCTEST: gi|30329272|gb|CD012534.1|CD012534
genomic: GGGAAGAGATTGGTGCTTCAGCAGTAGTTTGCTTGGGATATCCGCTGAAGgttttctata ... aatatttcagGGCATGAGTGGAACAATTCGGGATGAAACACTGCTGCAACTAAAAGTTCCT
EST: GGGAAGAGATTGGTGCTTCAGCAGTAGTTTGCTTGGGATATCCGCTGAAG GGCATGAGTGGAACAATTCGGGATGAAACACTGCTGCAACTAAAAGTTCCTEST: gi|30330142|gb|CD013404.1|CD013404
genomic: GGGAAGAGATTGGTGCTTCAGCAGTAGTTTGCTTGGGATATCCGCTGAAGgttttctata ... aatatttcagGGCATGAGTGGAACAATTCGGGATGAAACACTGCTGCAACTAAAAGTTCCT
EST: GGGAAGAGATTGGTGCTTCAGCAGTAGTTTGCTTGGGATATCCGCTGAAG GGCATGAGTGGAACAATTCGGGATGAAACACTGNTGCAACTAAAAGTTCCT
genomic: GGGAAGAGATTGGTGCTTCAGCAGTAGTTTGCTTGGGATATCCGCTGAAGgttttctata ... aatatttcagGGCATGAGTGGAACAATTCGGGATGAAACACTGCTGCAACTAAAAGTTCCT
ctgaatcatttcatttctgaagcaatttatttaattcagttacacaatatttcagGGCATGAGTGGAACAATTCGGGATGAAACACTGCTGCAACTAAAAGTTCCTATAATGTTTGTACAG
atttaat putative branch site (score: 4)
aatttatttaattcag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatgccagcatattctttgggagaatggtagtttatcttctgtgctgaatcatttcatttctgaagcaatttatttaattcagttacacaatatttcagGGCATGAGTGGAACAATTCGGGATGAAACACTGCTGCAACTAAAAGTTCCTATAATGTTTGTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
aaatgcc
- - - - - - - - - - -gagaatg
- - - - - - - - - - - - - - - - - - tcttctg
- - - - - - - - - - - - - - - - - - - - - -tgctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaagcaa