Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttttcctccaatctcacttgtggtagtatagtccttggtgtgcttctgtttttcttataatagcattctaaccatcattttctgttatggatgtgccagCTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGATGGGCTTGAGGCTTCTGGGCTAAGTGACCTCTCCAGGGTTACAAGTGTTG

Basic information

species Vitis vinifera
transcript Vv01s0150g00190.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0150g00190.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G134256_T01 (Zea mays), 3'ss of exon 3
---------------tttttcctccaat-ctcacttgtggtagta-tagtccttggt-gtgcttctgtttttcttataat-agcattctaaccatcattttctgttatggatgtgccagCTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGATGGGCTTGAGGCTTCTGGGCTAAGTGACCTCTCCAGGGTTACAAGTGTTG
               |   |   ||| | ||  | | || | ||  | |  || | | |||   ||| || |  ||  || |   |||  |   || ||    |||   |  |   |||||||| |||||  |  | |||||||| ||||| |||||||||||| | |||||||| |||||||||||  | |||||| | ||| | ||||| || ||||
gtaattgctgagttctgcattgcccactgctttcatatgattgtggttgaactcgatagtgtaactgcttgtggtaagattattgttcacatattcgttggtcgttgctgtcgctgcagCTTATTTTCTCAATTGCAAGATATGAGGCTGTGATTGATGCTTACCTCGATGGGCTAGAGGCTTCTGGCTTGAGTGACTTATCCCGAGTTACTAGCGTTG

upper sequence: Vv01s0150g00190.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA08G47790.3 (Glycine max), 3'ss of exon 4
-------tttttcctccaatctcacttgtggtagtatagtccttggtgtgcttctgtttttcttataatagcattctaaccatcattttctgttatggatgtgc-cagCTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGATGGGCTTGAGGCTTCTGGGCTAAGTGACCTCTCCAGGGTTACAAGTGTTG
        |    ||||||     ||   |  ||| | |||     ||    ||| ||  | | ||  |     || |  | | || ||||| |||   | ||| ||||| |||||||||||  | |||||||||||||| || ||||||||||| ||||| |||||||| |||||| ||| ||||||||| || |||||||||||||
tcgaaaactaagtctccaactgtcctgacg--agtgttgtctgacttg-atctctattactttcatggt-----tcaagtcttgatattctggtatttgtatgcacagCTGATATTCTCTCTTGCAAGATATGAAGCTGTAATAGATGCTTACTTGGATGGTCTTGAGGCATCTGGGTTAAATGACCTCTCTAGAGTTACAAGTGTTG

upper sequence: Vv01s0150g00190.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA18G53700.1 (Glycine max), 3'ss of exon 4
--tttttcctccaatctcacttgtggtagtatagtccttggtgtgcttctgtttttctta-taatagcattctaaccatcattttctgttatggatgtgc-cagCTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGATGGGCTTGAGGCTTCTGGGCTAAGTGACCTCTCCAGGGTTACAAGTGTTG
  ||    |||      ||  |||  |   | |||  |   | |||||   | | | ||| |   |   ||| |  |   || ||||| |||   | ||| ||||| |||||||||||  | |||||||||||||| |||||||| ||||| ||||| |||||||| |||| | ||| ||||||||| || |||||||||||| 
aattgaaactcagtctccaactgtcctga-agagtgtt--atctgctttgatctcttttactttcatggttcaagtctaaatattctggtatttgtatgcacaGCTGATATTCTCTCTTGCAAGATATGAAGCTGTAATTGATGCATACTTGGATGGTCTTGAGGCATCTGAGTTAAATGACCTCTCTAGAGTTACAAGTGTT-

upper sequence: Vv01s0150g00190.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: EFJ14873 (Selaginella moellendorffii), 3'ss of exon 4
tttttcctccaatctcacttgtggtagtatagtccttggtgtgcttctgtttttcttataatagcattctaaccatcattttctgttatggatgtgccagCTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGATGGGCTTGAGGCTTCTGGGCTAAGTGACCTCTCCAGGGTTACAAGTGTTG---
                          |||   | |||  |   || || |  || || | ||    |||   |  |  |||||| || |    ||  |||||||||||||| ||||| |||||||||||||| || ||||| ||  | ||||| || || ||   | |   | | || |||||  | ||  | ||||| |   
--------------------------gtaagcttcttaattctctact-taatttttttgat----ttc---ctctttttttcttttttttgcgtaacagCTTATATTCTCACTCCCAAGATATGAAGCTGTGATCGATGCATATCTCGATGGCCTCGAAGC---TAGAGAAGGAGATCTCTCGGGCGTCTCGAGTGTGGCTT

upper sequence: Vv01s0150g00190.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: EFJ38347 (Selaginella moellendorffii), 3'ss of exon 3
tttttcctccaatctcacttgtggtagtatagtccttggtgtgcttctgtttttcttataatagcattctaaccatcattttctgttatggatgtgccagCTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGATGGGCTTGAGGCTTCTGGGCTAAGTGACCTCTCCAGGGTTACAAGTGTTG---
                          |||   | |||  |   || ||   ||| || ||||    |||   |  |  |||||| || |    ||  |||||||||||||| ||||| |||||||||||||| || ||||| ||  | ||||| || || ||   | |   | | || |||||  | ||  | ||||| |   
--------------------------gtaagcttcttaattctctacttaattttttttaat----ttc---ctcttcttttcttttttttgcgtaacagCTTATATTCTCACTCCCAAGATATGAAGCTGTAATCGATGCATATCTCGATGGACTCGAAGC---TAGAGAAGGAGATCTCTCGGGCGTCTCGAGTGTGGCTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349823458|gb|FQ414868.1|FQ414868
EST:     TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACT                         CTTATATTCTCACTCCCGAGATATGAAGCTGTCATCGATGCTTACTTAGAT
genomic: TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACTgtaagttttt ... gatgtgccagCTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT
EST: gi|110699485|gb|EE076526.1|EE076526
EST:     TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTTAATGTAACT                         CTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT
genomic: TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACTgtaagttttt ... gatgtgccagCTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT
EST: gi|110425273|gb|EC991655.1|EC991655
EST:     CTTGGCATTAGTGTCAATGTAACT                         CTTATATTCTCTCTCCCGAGATATGAAGCTGTCATCGATGCTTACTTAGAT
genomic: CTTGGCATTAGTGTCAATGTAACTgtaagttttt ... gatgtgccagCTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT
EST: gi|110732932|gb|EE108661.1|EE108661
EST:     TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTTAATGTAACT                         CTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT
genomic: TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACTgtaagttttt ... gatgtgccagCTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT
EST: gi|33404929|gb|CF210556.1|CF210556
EST:     TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACT                         CTTATATTCTCTCTCCCGAGATATGAAGCTGTCATCGATGCTTACTTAGAT
genomic: TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACTgtaagttttt ... gatgtgccagCTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT
EST: gi|110697187|gb|EE073956.1|EE073956
EST:     TCCCTTCAATCAAGGAAGTCATTTCACTTGGCATTAGTGTCAATGTAACT                         CTTATATTCTCTCTCCCGAGATATGAAGCTGTCATCGATGCTTACTTAGAT
genomic: TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACTgtaagttttt ... gatgtgccagCTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT
EST: gi|161715884|gb|FC065503.1|FC065503
EST:     TCCCTTCA-TCAAGGAAGT-ATTTCACTTGGCAT-AGTGTCA-TGTA-CT                         CTTATAT-CTCTCTCC-GAGA-ATGA-GCTGTCAT-GATGCT
genomic: TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACTgtaagttttt ... gatgtgccagCTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCT
EST: gi|33404431|gb|CF210058.1|CF210058
EST:     TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACT                         CTTATATTCTCTCTCCCGAGATATGAAGCTGTCATCGATGCTTACTTAGAT
genomic: TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACTgtaagttttt ... gatgtgccagCTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT
EST: gi|110361653|gb|EC925142.1|EC925142
EST:     TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACT                         CTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT
genomic: TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACTgtaagttttt ... gatgtgccagCTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT
EST: gi|56409396|gb|CX017648.1|CX017648
EST:     TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACT                         CTTATATTCTCTCTCCCGAGATATGAAGCTGTCATCGATGCTTACTTAGAT
genomic: TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACTgtaagttttt ... gatgtgccagCTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT
EST: gi|351024148|gb|FQ423571.1|FQ423571
EST:     TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACT                         CTTATATTCTCTCTCCCGAGATATGAAGCTGTCATCGATGCTTACTTAGAT
genomic: TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACTgtaagttttt ... gatgtgccagCTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT
EST: gi|56409030|gb|CX017282.1|CX017282
EST:     TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACT                         CTTATATTCTCTCTCCCGAGATATGAAGCTGTCATCGATGCTTACTTAGAT
genomic: TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACTgtaagttttt ... gatgtgccagCTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT
EST: gi|110357208|gb|EC920582.1|EC920582
EST:     TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACT                         CTTATATTCTCTCTCCCGAGATATGAAGCTGTCATCGATGCTTACTTAGAT
genomic: TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACTgtaagttttt ... gatgtgccagCTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT
EST: gi|110685775|gb|EE062800.1|EE062800
EST:     TCCCTTCAATCAAGGAAGTCATTTCACTTGGCATTAGTGTCAATGTAACT                         CTTATATTCTCTCTCCCGAGATATGAAGCTGTCATCGATGCTTACTTAGAT
genomic: TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACTgtaagttttt ... gatgtgccagCTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT
EST: gi|351033461|gb|FQ462112.1|FQ462112
EST:     TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACT                         CTTATATTCTCTCTCCCGAGATATGAAGCTGTCATCGATGCTTACTTAGAT
genomic: TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACTgtaagttttt ... gatgtgccagCTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT
EST: gi|294964050|gb|GW837853.1|GW837853
EST:     TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACT                         CTTATATTCTCTCTCCCGAGATATGAAGCTGTCATCGATGCTTACTTAAAA
genomic: TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACTgtaagttttt ... gatgtgccagCTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGA-
EST: gi|349824896|gb|FQ406475.1|FQ406475
EST:     TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACT                         CTTATATTCTCTCTCCCGAGATATGAAGCTGTCCTCGATGCTTACTTAGAT
genomic: TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACTgtaagttttt ... gatgtgccagCTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT
EST: gi|110700295|gb|EE078171.1|EE078171
EST:     TCCCTTCAATCAAGGAAGTCATTTCACTTGGCATTAGTGTCAATGTAACT                         CTTATATTCTCTCTCCCGAGATATGAAGCTGTCATCGATGCTTACTTAGAT
genomic: TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACTgtaagttttt ... gatgtgccagCTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT
EST: gi|161716039|gb|FC067160.1|FC067160
EST:     TCCCTTCAATCAAGGGAGTTATTTCACTTGGCATTAGTGTCAATGTAACT                         CTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCT
genomic: TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACTgtaagttttt ... gatgtgccagCTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCT
EST: gi|71864767|gb|DT013822.1|DT013822
EST:     TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTTAATGTAACT                         CTTATATTCTCTCTCCCGAGATATGAGGCTGTCATTGATGCTTACTTAGAT
genomic: TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACTgtaagttttt ... gatgtgccagCTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT
EST: gi|110684980|gb|EE062879.1|EE062879
EST:     TCCCTTCAATCAAGGAAGTCATTTCACTTGGCATTAGTGTCAATGTAACT                         CTTATATTCTCTCTCCCGA-ATATGAAGCTGTCATCGATGCTTACTTAGAT
genomic: TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACTgtaagttttt ... gatgtgccagCTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT
EST: gi|110703972|gb|EE081374.1|EE081374
EST:     CCCTTCAATCAAAGAAGTTATTTCACTTGGCATTAGTGGT-AATGTAACT                         CTTATATTCTCTCTCCCGAGA
genomic: CCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTG-TCAATGTAACTgtaagttttt ... gatgtgccagCTTATATTCTCTCTCCCGAGA
EST: gi|30296452|gb|CB973246.1|CB973246
EST:     AGTGTCAATGTAACT                         CTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT
genomic: AGTGTCAATGTAACTgtaagttttt ... gatgtgccagCTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT
EST: gi|161705707|gb|FC056616.1|FC056616
EST:     TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACT                         CTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT
genomic: TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACTgtaagttttt ... gatgtgccagCTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT
EST: gi|110390253|gb|EC955153.1|EC955153
EST:     TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACT                         CTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT
genomic: TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACTgtaagttttt ... gatgtgccagCTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT
EST: gi|161712998|gb|FC062420.1|FC062420
EST:     TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACT                         CTTATATTCTCTCTTCCGAGATATGAAGCTGTCATCGATGCTTACTTAGAT
genomic: TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACTgtaagttttt ... gatgtgccagCTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT
EST: gi|110733171|gb|EE109127.1|EE109127
EST:     CCCTTCAATCAAAGAAGTCATTTCACTTGGCATTAGTGTTCA-TGTAACT                         CTTATATTCTCTCTCCCGAGATATGAAGCTGTCAT
genomic: CCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGT-CAATGTAACTgtaagttttt ... gatgtgccagCTTATATTCTCTCTCCCGAGATATGAAGCTGTCAT
EST: gi|110710945|gb|EE087578.1|EE087578
EST:     CCTTNCAATCAAGCA-GTCATTTCACNTTGGCATTAGTGTCAATGTAACT                         CTTATAATCTCT
genomic: CCTT-CAATCAAGGAAGTTATTTCAC-TTGGCATTAGTGTCAATGTAACTgtaagttttt ... gatgtgccagCTTATATTCTCT
EST: gi|110713755|gb|EE089953.1|EE089953
EST:     TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTTAATGTAACT                         CTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT
genomic: TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACTgtaagttttt ... gatgtgccagCTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT
EST: gi|110700719|gb|EE077621.1|EE077621
EST:     TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTTAATGTAACT                         CTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT
genomic: TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACTgtaagttttt ... gatgtgccagCTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT
EST: gi|56409430|gb|CX017682.1|CX017682
EST:     TCCCTTCAATCAAGGAAGTTACTTCACTTGGCATTAGTGTCAATGTAACT                         CTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT
genomic: TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACTgtaagttttt ... gatgtgccagCTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT
EST: gi|161706515|gb|FC055036.1|FC055036
EST:     TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACT                         CTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT
genomic: TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACTgtaagttttt ... gatgtgccagCTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT
EST: gi|33407548|gb|CF213175.1|CF213175
EST:     TCCCTTCAATCGAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACT                         CTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT
genomic: TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACTgtaagttttt ... gatgtgccagCTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT
EST: gi|33401595|gb|CF207222.1|CF207222
EST:     TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACT                         CTTAGATTCTATCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT
genomic: TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACTgtaagttttt ... gatgtgccagCTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT
EST: gi|30134026|gb|CB919364.1|CB919364
EST:     TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTTAATGTAACT                         CTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT
genomic: TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACTgtaagttttt ... gatgtgccagCTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT
EST: gi|71856507|gb|DT005562.1|DT005562
EST:     TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACT                         CTTATATTCTCTCT
genomic: TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACTgtaagttttt ... gatgtgccagCTTATATTCTCTCT
EST: gi|110692523|gb|EE071865.1|EE071865
EST:     TCCCTTCAATCAAGGAAGTCATTTCACTTGGCATTAGTGTCAATGTAACT                         CTTATATTCTCTCTCCCGAGA-ATGAAGCTGTCATCGATGCTTACTTAG
genomic: TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACTgtaagttttt ... gatgtgccagCTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAG
EST: gi|110697979|gb|EE075469.1|EE075469
EST:     TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAATGTTAATGGAACT                         CTTATATTCTCTCTCCCGAGATATGAAGCTGGCCTTGATGCTTACTTAAAT
genomic: TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACTgtaagttttt ... gatgtgccagCTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT
EST: gi|56408961|gb|CX017213.1|CX017213
EST:     TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACT                         CTTATATTCTCTCTCCCGAGATATGAAGCTGTCATCGATGCTTACTTAGAT
genomic: TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACTgtaagttttt ... gatgtgccagCTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT
EST: gi|110688023|gb|EE066103.1|EE066103
EST:     TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACT                         CTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT
genomic: TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACTgtaagttttt ... gatgtgccagCTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT
EST: gi|37188142|gb|CF607493.1|CF607493
EST:     GGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACT                         CTTATATTCTCTCTCCCGAGATATGAAGCTGTCATCGATGCTTACTTAGAT
genomic: GGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACTgtaagttttt ... gatgtgccagCTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT
EST: gi|110425862|gb|EC992257.1|EC992257
EST:     T-CCTTCAATCAAGGAAGTCATTTCACTTGGCATTAGTGTCAATGTAACT                         CTTATATTCTCTCTCCCGAGATATGAAGCTGTCATCGATGCTTACTTAGAT
genomic: TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACTgtaagttttt ... gatgtgccagCTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT
EST: gi|110359115|gb|EC920067.1|EC920067
EST:     TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACT                         CTTATATTCTCTCTCCCGAGATATGAAGCTGTCATCGATGCTTACTTAGAT
genomic: TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACTgtaagttttt ... gatgtgccagCTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT
EST: gi|110700272|gb|EE078124.1|EE078124
EST:     TCCCTTCAATCAAGGAAGTCATTTCACTTGGCATTAGTGTCAATGTAACT                         CTTATATTCTCTCTCCCGAGATATGAAGCTGTCATCGATGCTTACTTAGAT
genomic: TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACTgtaagttttt ... gatgtgccagCTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT
EST: gi|56409703|gb|CX017955.1|CX017955
EST:     TCCCTTCAATCAAGGAAGTTACTTCACTTGGCATTAGTGTCAATGTAACT                         CTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT
genomic: TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACTgtaagttttt ... gatgtgccagCTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT
EST: gi|110685495|gb|EE062275.1|EE062275
EST:     TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACT                         CTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT
genomic: TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACTgtaagttttt ... gatgtgccagCTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT
EST: gi|222357010|gb|GH717872.1|GH717872
EST:     TCCCTTCAATCAAGGAAGTCATTTCACTTGGCATTAGTGTCAATGTAACT                         CTTATATTCTCTCTCCCGAGATATGAAGCTGTCATCGATGCTTACTTAGAT
genomic: TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACTgtaagttttt ... gatgtgccagCTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT
EST: gi|110722800|gb|EE099382.1|EE099382
EST:     ATCAAGGAAGTCATTTCACTTGGCATTAGTGTCAATGTAACT                         CTTATATTCTCTCTCCCGAGATATGAAGCTGTCATCGATGCTTACTTAGAT
genomic: ATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACTgtaagttttt ... gatgtgccagCTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT
EST: gi|56409588|gb|CX017840.1|CX017840
EST:     TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACT                         CTTATATTCTCTCTCCCGAGATATGAAGCTGTCATCGATGCTTACTTAGAT
genomic: TCCCTTCAATCAAGGAAGTTATTTCACTTGGCATTAGTGTCAATGTAACTgtaagttttt ... gatgtgccagCTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgtttttcttataatagcattctaaccatcattttctgttatggatgtgccagCTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGATGGGCTTGAGGCTTCTGGGCTAAGTGACCTCTCCAGGGTTACAAGTGTTG
                     ttctaac  putative branch site (score: 1)
     ttttcttataata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tttttcctccaatctcacttgtggtagtatagtccttggtgtgcttctgtttttcttataatagcattctaaccatcattttctgttatggatgtgccagCTTATATTCTCTCTCCCGAGATATGAAGCTGTCATTGATGCTTACTTAGATGGGCTTGAGGCTTCTGGGCTAAGTGACCTCTCCAGGGTTACAAGTGTTG

- - tcctcca
- - - - - - - - - ttgtggt
- - - - - - - - - - - - - - - - tccttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcattct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -accatca