Sequence
atgc intronic sequence ATGC exonic sequencegtagttattgcatgtggcctttaaacttttaatgacgattctttctcaaagtaaaactcctcatagatgataaatagtagttatatgattgtttggctgtattggttcttttcagATAGCAAAGCTGCAGGATGACAACAAAGCACTAGATCGCCTTACCAAATCAAAAGAAGCAGCTTTACTTGAAGCTGAGAGGACTGTTCAGGTTGCATTGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g05790.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA02G09390.1 (Glycine max), 3'ss of exon 4
-------gtagttattgcatgtggcctt-taaacttttaatgacgattctttctcaaagtaaaactcctcatagatgataaatagtagttatatgattgtttggctgtattggttcttttcagATAGCAAAGCTGCAGGATGACAACAAAGCACTAGATCGCCTTACCAAATCAAAAGAAGCAGCTTTACTTGAAGCTGAGAGGACTGTTCAGGTTGCATTGG
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gtattaccttgttcttggagttcatattgtaatcccctggagaaagagctg----atggaaggacttaaactggcttaaaatgagtaattttttgatt-tgtacttccatttattccttgcagATTGCTAAACTACAAGATGATAACAAAGCTTTAGATCGTCTTACCAAATCTAAAGAAGCTGCACTACTTGAAGCTGAGAGGACTGTCCAGGTTGCCTTGG
upper sequence: Vv01s0011g05790.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA07G26540.1 (Glycine max), 3'ss of exon 4
-------gtagttattgcatgtggcctt-taaacttttaatgacgattctttctcaaagtaaaactcctcatagatgataaatagtagttatatgattgtttggctgtattggttcttttcagATAGCAAAGCTGCAGGATGACAACAAAGCACTAGATCGCCTTACCAAATCAAAAGAAGCAGCTTTACTTGAAGCTGAGAGGACTGTTCAGGTTGCATTGG
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gtattaccttgttcttggagttcatattataatcccctggagaaagagctgttggaagg----actgaaactggcttaaaatgagtggttttttactt-tgtacttccatttattccttgcagATTGCTAAACTACAAGATGATAACAAAGCTTTAGATCGTCTTACCAAATCTAAAGAAGCTGCACTACTTGAAGCTGAGAGGACTGTCCAGGTTGCCCTGG
upper sequence: Vv01s0011g05790.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA05G34560.1 (Glycine max), 3'ss of exon 4
gtagttattgcatgtggccttta--aac-----ttttaatgacgattctttctcaaagtaaaactcctcatagatgataaatagtagttatatgattgtttggctgtattggttcttttcagATAGCAAAGCTGCAGGATGACAACAAAGCACTAGATCGCCTTACCAAATCAAAAGAAGCAGCTTTACTTGAAGCTGAGAGGACTGTTCAGGTTGCATTGG
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gta-ttattacactggtcttctatgaacagtgattcccatgagaagaaactgatgaaggggaccgaagctgacttgtcataggtgatttatgtcattattttcttcaatttgtttcttacagATTGCTAAACTTCAAGATGATAACAAAGCTTTAGATCGTCTTACCAAATCTAAAGAAGCAGCACTTATTGAAGCTGAGAAGACTGTACAGATTGCCTTGG
upper sequence: Vv01s0011g05790.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA08G05100.1 (Glycine max), 3'ss of exon 4
gtagttattgcatgtggcctttaaacttttaatgacgattctttctcaaagtaaaactcc--------tcatagatgataaatagtag-----ttatatgattgtttggctgtattggttcttttcagATAGCAAAGCTGCAGGATGACAACAAAGCACTAGATCGCCTTACCAAATCAAAAGAAGCAGCTTTACTTGAAGCTGAGAGGACTGTTCAGGTTGCATTGG
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gta-ttattacttt--gttcttctactttgaatggtgattccca-tgagaataaaatgatgaaggggactgaagctgacttgtcataggtgatttatgtcattattttcttcaatttgtttcgaacagATAGCAAAACTTCAAGATGATAACAAAGCTTTAGACCGTCTCACCAAATCTAAAGAAGCAGCACTTATTGAAGCTGAGAAGACTGTACAGATTGCCTTGG
upper sequence: Vv01s0011g05790.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT1G68060.1 (Arabidopsis thaliana), 3'ss of exon 4
gtagttattgcatgtggcctttaaacttttaatgacgattctttctcaaagtaaaactcctcatagatgataaatagtagttatatgattgtttggctgtattggttcttttcagATAGCAAAGCTGCAGGATGACAACAAAGCACTAGATCGCCTTACCAAATCAAAAGAAGCAGCTTTACTTGAAGCTGAGAGGACTGTTCAGGTTGCATTGG
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------------------------------------gtatgttttactcatttgaagtcc----aaatttctacttgcaaat---cggatattaatttatgatgtttctgtgaagATTGGGAAGCTTCAAGAAGATAACAGAGCTTTGGATCGTCTCACTAAATCAAAAGAAGCGGCTTTACTTGATGCTGAGAGGACTGTTGAAACTGCTCTGG
upper sequence: Vv01s0011g05790.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT1G14840.2 (Arabidopsis thaliana), 3'ss of exon 4
gtagttattgcatgtggcctttaaacttttaatgacgattctttctcaaagtaaaactcctcatag-atgataaatagtagttatatgattgtttggctgtattggttcttttcagATAGCAAAGCTGCAGGATGACAACAAAGCACTAGATCGCCTTACCAAATCAAAAGAAGCAGCTTTACTTGAAGCTGAGAGGACTGTTCAGGTTGCATTGG
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----gtattttcctt--cctttgaaccag-aattacctttgtatagctcgattcaacaacttacgggacatttaacagctttctcatatgggtttacatgttttgattggt---agATTGCTAAACTTCAAGACGACAATAAATCATTGGACCGCCTAACCAAATCAAAGGAAGCAGCTTTGCTTGACGCTGAAAGGACAGTTCAGTCTGCATTGG
upper sequence: Vv01s0011g05790.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT1G24764.1 (Arabidopsis thaliana), 3'ss of exon 4
gtagttattgcatgtggcctttaaacttttaatgacgattctttctcaaagtaaaactcctcatag-atgataaatagtagttatatgattgtttggctgtattggttcttttcagATAGCAAAGCTGCAGGATGACAACAAAGCACTAGATCGCCTTACCAAATCAAAAGAAGCAGCTTTACTTGAAGCTGAGAGGACTGTTCAGGTTGCATTGG
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---------gtatattgtcattttaagtctaac-----tgcttgct----gtttactttcatatgggatattgaaagtttatgaggtcactgatcaaatctcttgtatctgtgtagATTGGAAAGCTTCAAGAAGATAACAGGGCTTTGGACCGTCTGACTAAATCAAAGGAAGCTGCCTTACTTGAAGCTGAGAGGACCGTTGAAGCTGCCATGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122691687|gb|EC982203.1|EC982203EST: AAGCGATTCTTGCACCGTTGGAGGCTGAGCTCAAGCTTGCTCGGCAGGAG ATAGCAAAGCTGCAGGATGACAACAAAGCACTAGATCGCCTTACCAAATCA
genomic: AAGCGATTCTTGCACCGTTGGAGGCTGAGCTCAAGCTTGCTCGGCAGGAGgtagttattg ... ttcttttcagATAGCAAAGCTGCAGGATGACAACAAAGCACTAGATCGCCTTACCAAATCA
EST:
gi|161719957|gb|FC067712.1|FC067712EST: GCGATTCTTGCACCGTTGGAGGCTGAGCTCAAGCTTGCTCGGCAGGAG ATAGCAAAGCTGCAGGATGACAACAAAGCACTAGATCGCCTTACCAAATCA
genomic: GCGATTCTTGCACCGTTGGAGGCTGAGCTCAAGCTTGCTCGGCAGGAGgtagttattg ... ttcttttcagATAGCAAAGCTGCAGGATGACAACAAAGCACTAGATCGCCTTACCAAATCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcatagatgataaatagtagttatatgattgtttggctgtattggttcttttcagATAGCAAAGCTGCAGGATGACAACAAAGCACTAGATCGCCTTACCAAATCAAAAGAAGCAGCTTTACTTGAAGCTGAGAGGACTGTTCAGGTTGCATTGG
ttcttttc CT-rich tract
ataaatagtagttata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtagttattgcatgtggcctttaaacttttaatgacgattctttctcaaagtaaaactcctcatagatgataaatagtagttatatgattgtttggctgtattggttcttttcagATAGCAAAGCTGCAGGATGACAACAAAGCACTAGATCGCCTTACCAAATCAAAAGAAGCAGCTTTACTTGAAGCTGAGAGGACTGTTCAGGTTGCATTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA