Sequence
atgc intronic sequence ATGC exonic sequencegtacgttaaattttcccatacatccatttatcttctcaggcaggttgtttgggtgttcatttctcaaatttaacaaatattgaaactggatggactggaaccagGTGAAAGCTGATGTGGAAACTCAAGGTGATTTTGTCCAGTCATTGGCAACTGAAGTTCGAGCTGCTTCCTTTACCAAAATAGAAGATCTGGTGGCCTTTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g02860.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA01G22620.1 (Glycine max), 3'ss of exon 4
gtacgttaaattttcccatacatccatttatcttctcaggcaggttgtttgggtgttcatttctcaaatttaacaaatattgaaactggatggactggaaccagGTGAAAGCTGATGTGGAAACTCAAGGTGATTTTGTCCAGTCATTGGCAACTGAAGTTCGAGCTGCTTCCTTTACCAAAATAGAAGATCTGGTGGCCTTTG
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gtatgttgaagcttcc-atctattttgttatttttctcatttttacactgaagtcttaa---cacatttttgaaaaatatttctcttctgtgtaac--aatcagGTGAAAGCTGATGTAGAAACACAAGGTGATTTTGTCATGTCCTTGGCAGCTGAAGTTCGAGCAGCCTCCTTCTCAGATATTAATGACTTGGTGGCCTTTG
upper sequence: Vv01s0011g02860.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA02G11260.1 (Glycine max), 3'ss of exon 4
gtacgttaaattttcc-catacatccatttatcttctcaggcaggttgtttgggtgttcatttctcaaatttaacaaatattgaaactggatggactggaaccagGTGAAAGCTGATGTGGAAACTCAAGGTGATTTTGTCCAGTCATTGGCAACTGAAGTTCGAGCTGCTTCCTTTACCAAAATAGAAGATCTGGTGGCCTTTG
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gtatgttgaagcctccatctatttttgttattttttctcattttaagactcaagtctaga---cacatttttgaaaaatatttctcctctgtctaac--aatcagGTGAAAGCTGATGTAGAAACACAAGGTGATTTTGTCATGTCCTTGGCAGCTGAAGTTCGAGCAGCCTCCTTCTCAGATATTAATGACTTGGTGGCCTTTG
upper sequence: Vv01s0011g02860.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA20G32630.1 (Glycine max), 3'ss of exon 3
gtacgttaaattttcccatacatccatttatcttctcaggcaggttgtttgggtgttcatttctcaaatttaacaaatattgaaactggatggactggaaccagGTGAAAGCTGATGTGGAAACTCAAGGTGATTTTGTCCAGTCATTGGCAACTGAAGTTCGAGCTGCTTCCTTTACCAAAATAGAAGATCTGGTGGCCTTTG
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gtacattaaaatttccctccagttttgttattttttcacattggcattcta-----tcattac--aaattttataacctttttaa----------tggatctagGTGAAAGCCGATGTGGAAACACAGGGTGACTTTGTCATCTCCTTGGCAACTGAAGTTAGAGCAGCCTCGTTCTCTAAGATTGAAGATCTGGTGGCTTTTG
upper sequence: Vv01s0011g02860.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT3G25690.2 (Arabidopsis thaliana), 3'ss of exon 5
gtacgttaaattttcccatacatccatttatcttctcaggcaggttgtttgggtgttcatttctcaaatttaacaaatattgaaactggatggactggaac-cagGTGAAAGCTGATGTGGAAACTCAAGGTGATTTTGTCCAGTCATTGGCAACTGAAGTTCGAGCTGCTTCCTTTACCAAAATAGAAGATCTGGTGGCCTTTG
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---------------------gtaagttcacactttcaatataatgttaaatgcaattggatttgaaac--aaagaatc----aattgtttaaacttgattacagGTAAAAGCGGATGTGGAGACACAAGGGGACTTTGTACAGTCGTTAGCAACTGAAGTCCGAGCTTCTTCTTTCACCGACATAGAAGATCTCTTGGCGTTCG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgggtgttcatttctcaaatttaacaaatattgaaactggatggactggaaccagGTGAAAGCTGATGTGGAAACTCAAGGTGATTTTGTCCAGTCATTGGCAACTGAAGTTCGAGCTGCTTCCTTTACCAAAATAGAAGATCTGGTGGCCTTTG
atttaac putative branch site (score: 3)
atttctcaaatttaac TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacgttaaattttcccatacatccatttatcttctcaggcaggttgtttgggtgttcatttctcaaatttaacaaatattgaaactggatggactggaaccagGTGAAAGCTGATGTGGAAACTCAAGGTGATTTTGTCCAGTCATTGGCAACTGAAGTTCGAGCTGCTTCCTTTACCAAAATAGAAGATCTGGTGGCCTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG