1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ggggatgtgtttatgtatgtcagattgctttagttagtttatcccatttttgaactactaaatgagtaatttcattatttattttccgactgagtttcagAAACCAGATGATGAGGACTCGGAGTTCTTAAGTCAAGAGGAAGAATTTTGCTTGCCCCAAAGTTATTTTGCCAAAGAAGAATCGTAACTCACAAAATTTA
species | Vitis vinifera |
transcript | Vv01s0011g00610.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTGAGGAGGTTTTGCAGTTGCTGGATCGTTTCTACAACTTAGAAATGCTG AAACCAGATGATGAGGACTCGGAGTTCTTAAGTCAAGAGGAAGAATTTTGCEST: gi|349823301|gb|FQ400280.1|FQ400280
genomic: CTGAGGAGGTTTTGCAGTTGCTGGATCGTTTCTACAACTTAGAAATGCTGgtatctataa ... tgagtttcagAAACCAGATGATGAGGACTCGGAGTTCTTAAGTCAAGAGGAAGAATTTTGC
EST: CTGAGGAGGTTTTGCAGTTGCTGGATCGTTTCTACAACTTAGAAATGCTG AAACCAGATGATGAGGACTCGGAGTTCTTAAGTCAAGAGGAAGAATTTTGCEST: gi|110398739|gb|EC965213.1|EC965213
genomic: CTGAGGAGGTTTTGCAGTTGCTGGATCGTTTCTACAACTTAGAAATGCTGgtatctataa ... tgagtttcagAAACCAGATGATGAGGACTCGGAGTTCTTAAGTCAAGAGGAAGAATTTTGC
EST: CTGAGGAGGTTTTGCAGTTGCTGGATCGTTTCTACAACTTAGAAATGCTG AAACCAGATGATGAGGACTCGGAGTTCTTAAGTCAAGAGGAAGAATTTTGCEST: gi|351019014|gb|FQ426513.1|FQ426513
genomic: CTGAGGAGGTTTTGCAGTTGCTGGATCGTTTCTACAACTTAGAAATGCTGgtatctataa ... tgagtttcagAAACCAGATGATGAGGACTCGGAGTTCTTAAGTCAAGAGGAAGAATTTTGC
EST: CTGAGGAGGTTTTGCAGTTGCTGGATCGTTTCTACAACTTAGAAATGCTG AAACCAGATGATGAGGACTCGGAGTTCTTAAGTCAAGAGGAAGAATTTTGCEST: gi|254916779|gb|GR905605.1|GR905605
genomic: CTGAGGAGGTTTTGCAGTTGCTGGATCGTTTCTACAACTTAGAAATGCTGgtatctataa ... tgagtttcagAAACCAGATGATGAGGACTCGGAGTTCTTAAGTCAAGAGGAAGAATTTTGC
EST: CTGAGGAGGTTTTGCAGTTGCTGGATCGTTTCTACAACTTAGAAATGCTG AAACCAGATGATGAGGACTCGGAGTTCTTAAGTCAAGAGGAAGAATTTTGCEST: gi|110422343|gb|EC988664.1|EC988664
genomic: CTGAGGAGGTTTTGCAGTTGCTGGATCGTTTCTACAACTTAGAAATGCTGgtatctataa ... tgagtttcagAAACCAGATGATGAGGACTCGGAGTTCTTAAGTCAAGAGGAAGAATTTTGC
EST: CTGAGGAGGTTTTGCAGTTGCTGGATCGTTTCTACAACTTAGAAATGCTG AAACCAGATGATGAGGACTCGGAGTTCTTAAGTCAAGAGGAAGAATTTTGCEST: gi|349816866|gb|FQ399734.1|FQ399734
genomic: CTGAGGAGGTTTTGCAGTTGCTGGATCGTTTCTACAACTTAGAAATGCTGgtatctataa ... tgagtttcagAAACCAGATGATGAGGACTCGGAGTTCTTAAGTCAAGAGGAAGAATTTTGC
EST: CTGAGGAGGTTTTGCAGTTGCTGGATCGTTTCTACAACTTAGAAATGCTG AAACCAGATGATGAGGACTCGGAGTTCTTAAGTCAAGAGGAAGAATTTTGC
genomic: CTGAGGAGGTTTTGCAGTTGCTGGATCGTTTCTACAACTTAGAAATGCTGgtatctataa ... tgagtttcagAAACCAGATGATGAGGACTCGGAGTTCTTAAGTCAAGAGGAAGAATTTTGC
atttttgaactactaaatgagtaatttcattatttattttccgactgagtttcagAAACCAGATGATGAGGACTCGGAGTTCTTAAGTCAAGAGGAAGAATTTTGCTTGCCCCAAAGTTATTTTGCCAAAGAAGAATCGTAACTCACAAAATTTA
tactaaa putative branch site (score: 1)
tactaaatgagtaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggggatgtgtttatgtatgtcagattgctttagttagtttatcccatttttgaactactaaatgagtaatttcattatttattttccgactgagtttcagAAACCAGATGATGAGGACTCGGAGTTCTTAAGTCAAGAGGAAGAATTTTGCTTGCCCCAAAGTTATTTTGCCAAAGAAGAATCGTAACTCACAAAATTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- ggatgtg
- - - - - - - gtatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatgag