Sequence
atgc intronic sequence ATGC exonic sequencegtaactagtttgtttgcttggctgtagtaaggttccctttcttgcttccatggttcatacaactgaactctacttgtgcaaattgcagGAGGTGGGTTTCATAATGTTCTTGTGATTGGAGCTGATGCTCTTTCTCGCTATGTTGATTGGACTGATAGAGGGACCTGTATTCTCTTTGGGGATGCTGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0233g00060.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA09G41380.1 (Glycine max), 3'ss of exon 4
gtaactagtttgtttgcttggctgtagtaaggttccctttcttgcttccatggttcatacaactgaactctacttgtgcaaattgcagGAGGTGGGTTTCATAATGTTCTTGTGATTGGAGCTGATGCTCTTTCTCGCTATGTTGATTGGACTGATAGAGGGACCTGTATTCTCTTTGGGGATGCTGC
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gta-tgaattggctatttttgttgtcttgataattcctaaat-------atgttgaaaatcattgcccttta-ttgtgtgagtt-cagGAGGTGGGTTTAATAATGTTCTAGTTATTGGGGCGGATGCTCTTTCACGATATGTTGATTGGACAGACAGAGGGACCTGTATTCTTTTTGGGGATGCTGC
upper sequence: Vv00s0233g00060.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA18G44350.1 (Glycine max), 3'ss of exon 4
gtaactagtttgtttgcttggctgtagtaaggttccctttcttgcttccatggttcatacaactgaactctacttgtgcaaattgcagGAGGTGGGTTTCATAATGTTCTTGTGATTGGAGCTGATGCTCTTTCTCGCTATGTTGATTGGACTGATAGAGGGACCTGTATTCTCTTTGGGGATGCTGC-
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--tatgaattggttatttttgtcagcttgatagttcctaaat-------atggggaaaatcattgcccttta-ttgtgtgaat-gcaggAGGTGGATTTAATAATGTTCTAGTTATTGGGGCGGATGCTCTCTCACGATATGTTGATTGGACAGACAGAGGGACCTGTATTCTTTTTGGGGATGCTGCT
upper sequence: Vv00s0233g00060.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA15G00550.1 (Glycine max), 3'ss of exon 3
gta-actagtttgtttgcttggctgtagtaaggttccctttcttgcttc-catggttcatacaactgaactctacttgtgcaaattgcagGAGGTGGGTTTCATAATGTTCTTGTGATTGGAGCTGATGCTCTTTCTCGCTATGTTGATTGGACTGATAGAGGGACCTGTATTCTCTTTGGGGATGCTGC
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gtatgaaagcttataatttttatttttatttacttaa--tacttgctaaatatgatgaaaaccgttgcccttta-ttgtgtgagt-gcagGGGGTGGTTTTAATAATGTTCTAGTCATTGGAGCCGATGCTATTTCACGATATGTTGATTGGACAGATAGAGGCTCCTGTATTCTTTTTGGGGATGCTGC
upper sequence: Vv00s0233g00060.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT1G62640.2 (Arabidopsis thaliana), 3'ss of exon 5
gtaactagtttgtttgctt--ggctgtagtaag-gttccctttcttgcttccatggttcatacaactgaactctacttgtgcaaattgcagGAGGTGGGTTTCATAATGTTCTTGTGATTGGAGCTGATGCTCTTTCTCGCTATGTTGATTGGACTGATAGAGGGACCTGTATTCTCTTTGGGGATGCTGC
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gtaaaagtcaaataagattcaaattcgaataagtaatgaataagttaagtgtatagttcttgtccct---ttctgttt-------tttcagGAGGCGGTTTTAAGAACGTTTTAGTGATCGGAGCTGATTCTTTGTCTCGGTTTGTTGATTGGACGGATAGAGGGACTTGCATTCTATTTGGAGATGCTGC
upper sequence: Vv00s0233g00060.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: PP1S11_305V6.1 (Physcomitrella patens), 3'ss of exon 6
-gtaactagtttgtttgcttgg----ctgtagtaaggttccctttcttgcttccatggttca----tacaactgaactctacttgtgcaaat---tgcagGAGGTGGGTTTCATAATGTTCTTGTGATTGGAGCTGATGCTCTTTCTCGCTATGTTGATTGGACTGATAGAGGGACCTGTATTCTCTTTGGGGATGCTGC
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tgttatatttttgtcttcctaagcaatcgaattgagttctttcaacttggtaaaccaatcgaaagttgtctcctaaagctaaatttgaaggtgtgtgcagGAGGTGGTTACGAAAATGTTCTTGTGGTTGGTTCTGATGCTCTTTCAAGATACGTGGATTGGACGGATAGAGGAACGTGTATCCTATTTGGTGATGCTTC
upper sequence: Vv00s0233g00060.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: PP1S119_22V6.2 (Physcomitrella patens), 3'ss of exon 6
--gtaactagtttgtttgcttggctgtagtaaggttccctttcttgcttc--------catggttcatacaactgaactctacttgtgcaaat---tgcagGAGGTGGGTTTCATAATGTTCTTGTGATTGGAGCTGATGCTCTTTCTCGCTATGTTGATTGGACTGATAGAGGGACCTGTATTCTCTTTGGGGATGCTGC
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gggaaactaagtccactgaaagg-tgcacttaattcatcctatctacttagagaatcacatgatgttggctgtctaaaactaacttcgaaagtgtgtgcagGAGGAGGTTACAAGAATGTACTTGTGGTGGGTGCGGATGCTCTATCGCGATACGTGGATTGGACTGACAGAGGGACATGTATTCTGTTTGGCGATGCCTCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110426428|gb|EC992837.1|EC992837EST: ATGTAGCGGATTTGTGTTGGGTCTAGTCTCAGCTGCTTGTCATATTAGGG GAGGTGGGTTTCATAATGTTCTTGTGATTGGAGCTGATGCTCTTTCTCGCT
genomic: ATGTAGCGGATTTGTGTTGGGTCTAGTCTCAGCTGCTTGTCATATTAGGGgtaactagtt ... caaattgcagGAGGTGGGTTTCATAATGTTCTTGTGATTGGAGCTGATGCTCTTTCTCGCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tccctttcttgcttccatggttcatacaactgaactctacttgtgcaaattgcagGAGGTGGGTTTCATAATGTTCTTGTGATTGGAGCTGATGCTCTTTCTCGCTATGTTGATTGGACTGATAGAGGGACCTGTATTCTCTTTGGGGATGCTGC
aaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaactagtttgtttgcttggctgtagtaaggttccctttcttgcttccatggttcatacaactgaactctacttgtgcaaattgcagGAGGTGGGTTTCATAATGTTCTTGTGATTGGAGCTGATGCTCTTTCTCGCTATGTTGATTGGACTGATAGAGGGACCTGTATTCTCTTTGGGGATGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC