Sequence
atgc intronic sequence ATGC exonic sequence...ttgcaaataatttacaattgaggcatactatctttgatttcatgatgaagtgaattgcttccttttgcaagtaaatatcatacaatggatgatttggcagGATTCCTTTTATAACAATTTGACTGAAGAGGAACTTGCACGAGTTCATGAATACAACTTTGACCATCCTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0015g01730.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA14G01480.1 (Glycine max), 3'ss of exon 2
ttgcaaataatttacaattgaggcatactatctttgatttcatgat----gaagtgaattgcttccttttgcaagtaaatatcatacaatggatgatttggcagGATTCCTTTTATAACAATTTGACTGAAGAGGAACTTGCACGAGTTCATGAATACAACTTTGACCATCCTG
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----atcttttttgagggtatgtgttccagaatttgggttgatgtttcttattgtacatgatgatacgttgagcgtaataaatgaattatttattttacaacagGATTCTTTTTACCATAATTTGACTGAGGAGGAACTTACAAGAGTACAAGATTACAACTTTGACCATCCTG
upper sequence: Vv19s0015g01730.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA18G08180.1 (Glycine max), 3'ss of exon 3
ttgcaaataatttacaattgaggcatactatctttgatttcatgatgaagtgaattgcttccttttgcaagtaaatatcatacaatggatgatttg--gcagGATTCCTTTTATAACAATTTGACTGAAGAGGAACTTGCACGAGTTCATGAATACAACTTTGACCATCCTG-
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-tgtttttctttttcagt-gacatgtttcaaaatttgcttcaagtttct-tattgtacttatattgatacatcgagattaatatataaactatttgtgacaggATTCTTTTTACAATAACTTGACGGAGGAGGAACTTACAAGAGTACAAGATTACAACTTTGACCATCCTGG
upper sequence: Vv19s0015g01730.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G45270.1 (Glycine max), 3'ss of exon 3
ttgcaaataatttacaattgaggcatactatctttgatttcatgatgaagtgaattgcttccttttgcaagtaaatatcatacaatggatgattt--ggcagGATTCCTTTTATAACAATTTGACTGAAGAGGAACTTGCACGAGTTCATGAATACAACTTTGACCATCCTG
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gtttttctctttttcagt-gacatgtttcaaaattagctaaatgtttct-tattgtacttatattgatagatcaagattaatatataaactatttgtgacagGATTCTTTTTACAATAACTTGACGGAGGAGGAACTTACAAGAGTACAAGATTACAACTTTGACCATCCTG
upper sequence: Vv19s0015g01730.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT4G26510.2 (Arabidopsis thaliana), 3'ss of exon 3
------ttgcaaataatttacaattgaggcatactatctttgatttcatgatgaa--gtgaattgcttccttttgcaagtaaatatcatacaatggatgattt--ggcagGATTCCTTTTATAACAATTTGACTGAAGAGGAACTTGCACGAGTTCATGAATACAACTTTGACCATCCTG
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tatttatgtcagtctatttatctaattctcaaatt-cctttggcatcatgataaaccacaaattgct--------cgacttaatatcctatgata-atgatttttggcagGACTCGTTCTATCATAATCTGACTGAAGAAGAACTTGCTAGAGTTCATGAATACAACTTTGATCATCCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161718287|gb|FC066969.1|FC066969EST: ACATGATTATTGAGCAACTGCATGATCAGCGTGTTGTACTAGTAAACCAG GATTCCTTTTATAACAATTTGACTGAAGAGGAACTTGCACGAGTTCATGAA
genomic: ACATGATTATTGAGCAGCTGCATGATCAGCGTGTTGTACTAGTAAACCAGgtaattcgtg ... gatttggcagGATTCCTTTTATAACAATTTGACTGAAGAGGAACTTGCACGAGTTCATGAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgaagtgaattgcttccttttgcaagtaaatatcatacaatggatgatttggcagGATTCCTTTTATAACAATTTGACTGAAGAGGAACTTGCACGAGTTCATGAATACAACTTTGACCATCCTG
taaatatcatacaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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ttgcaaataatttacaattgaggcatactatctttgatttcatgatgaagtgaattgcttccttttgcaagtaaatatcatacaatggatgatttggcagGATTCCTTTTATAACAATTTGACTGAAGAGGAACTTGCACGAGTTCATGAATACAACTTTGACCATCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- -caaataa
- - - - - - - - - - - gcatact
- - - - - - - - - - - - - - - - - - - - catgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagtaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catacaa