1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttaatttttcccttctgtgcttgctttggcagagtagtttatttgaaaagtgatttttatatggtgtttgattttataatttcagGGAAGATCTGCACCTTGGAAGCATACACTGGAAG
species | Vitis vinifera |
transcript | Vv18s0122g00190.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGGACGTTCGAGATGACACTGAGACATTCCTCAGCAAAATAGTTCCAGAG GGAAGATCTGCACCTTGGAAGCATACACTGGAAGEST: gi|26262702|gb|CA813765.1|CA813765
genomic: CGGACGTTCGAGATGACACTGAGACATTCCTCAGCAAAATAGTTCCAGAGgttaattttt ... ataatttcagGGAAGATCTGCACCTTGGAAGCATACACTGGAAG
EST: CAGCAAAATAGTTCCAGAG GGAAGATCTGCACCTTGGAAGCATACACTGGAAGEST: gi|110387568|gb|EC952248.1|EC952248
genomic: CAGCAAAATAGTTCCAGAGgttaattttt ... ataatttcagGGAAGATCTGCACCTTGGAAGCATACACTGGAAG
EST: CGGACGTTCGAGATGACACTGAGACATTCCTCAGCAAAATAGTTCCAGAG GGAAGATCTGCACCTTGGAAGCATACACTGGAAGEST: gi|110398891|gb|EC965370.1|EC965370
genomic: CGGACGTTCGAGATGACACTGAGACATTCCTCAGCAAAATAGTTCCAGAGgttaattttt ... ataatttcagGGAAGATCTGCACCTTGGAAGCATACACTGGAAG
EST: CGGACGTTCGAGATGACACTGAGACATTCCTCAGCAAAATAGTTCCAGAG GGAAGATCTGCACCTTGGAAGCATACACTGGAAGEST: gi|351014365|gb|FQ437367.1|FQ437367
genomic: CGGACGTTCGAGATGACACTGAGACATTCCTCAGCAAAATAGTTCCAGAGgttaattttt ... ataatttcagGGAAGATCTGCACCTTGGAAGCATACACTGGAAG
EST: CGGACGTTCGAGATGACACTGAGACATTCCTCAGCAAAATAGTTCCAGAG GGAAGATCTGCACCTTGGAAGCATACACTGGAAGEST: gi|110386869|gb|EC951501.1|EC951501
genomic: CGGACGTTCGAGATGACACTGAGACATTCCTCAGCAAAATAGTTCCAGAGgttaattttt ... ataatttcagGGAAGATCTGCACCTTGGAAGCATACACTGGAAG
EST: CGGACGTTCGAGATGACACTGAGACATTCCTCAGCAAAATAGTTCCAGAG GGAAGATCTGCACCTTGGAAGCATACACTGGAAGEST: gi|71857030|gb|DT006085.1|DT006085
genomic: CGGACGTTCGAGATGACACTGAGACATTCCTCAGCAAAATAGTTCCAGAGgttaattttt ... ataatttcagGGAAGATCTGCACCTTGGAAGCATACACTGGAAG
EST: CGGACGTTCGAGATGACACTGAGACATTCCTCAGCAAAATAGTTCCAGAG GGAAGATCTGCACCTTGGAAGCATACACTGGAAGEST: gi|110732164|gb|EE107221.1|EE107221
genomic: CGGACGTTCGAGATGACACTGAGACATTCCTCAGCAAAATAGTTCCAGAGgttaattttt ... ataatttcagGGAAGATCTGCACCTTGGAAGCATACACTGGAAG
EST: CGGACGTTCGAGATGACACTGAGACATTCCTCAGCAAAATAGTTCCAGAG GGAAGATCTGCACCTTGGAAGCATACACTGGAAGEST: gi|26257553|gb|CA808616.1|CA808616
genomic: CGGACGTTCGAGATGACACTGAGACATTCCTCAGCAAAATAGTTCCAGAGgttaattttt ... ataatttcagGGAAGATCTGCACCTTGGAAGCATACACTGGAAG
EST: CGGACGTTCGAGATGACACTGAGACATTCCTCAGCAAAATAGTTCCAGAG GGAAGATCTGCACCTTGGAAGCATACACTGGAAGEST: gi|28959343|gb|CB339672.1|CB339672
genomic: CGGACGTTCGAGATGACACTGAGACATTCCTCAGCAAAATAGTTCCAGAGgttaattttt ... ataatttcagGGAAGATCTGCACCTTGGAAGCATACACTGGAAG
EST: CGGACGTTCGAGATGACACTGAGACATTCCTCAGCAAAATAGTTCCAGAG GGAAGATCTGCACCTTGGAAGCATACACTGGAAGEST: gi|26258319|gb|CA809382.1|CA809382
genomic: CGGACGTTCGAGATGACACTGAGACATTCCTCAGCAAAATAGTTCCAGAGgttaattttt ... ataatttcagGGAAGATCTGCACCTTGGAAGCATACACTGGAAG
EST: CGGACGTTCGAGATGACACTGAGACATTCCTCAGCAAAATAGTTCCAGAG GGAAGATCTGCACCTTGGAAGCATACACTGGAAGEST: gi|254916144|gb|GR904002.1|GR904002
genomic: CGGACGTTCGAGATGACACTGAGACATTCCTCAGCAAAATAGTTCCAGAGgttaattttt ... ataatttcagGGAAGATCTGCACCTTGGAAGCATACACTGGAAG
EST: CGGACGTTCGAGATGACACTGAGACATTCCTCAGCAAAATAGTTCCAGAG GGAAGATCTGCACCTTGGAAGCATACACTGGAAGEST: gi|28959153|gb|CB339578.1|CB339578
genomic: CGGACGTTCGAGATGACACTGAGACATTCCTCAGCAAAATAGTTCCAGAGgttaattttt ... ataatttcagGGAAGATCTGCACCTTGGAAGCATACACTGGAAG
EST: CGGACGTTCGAGATGACACTGAGACATTCCTCAGCAAAATAGTTCCAGAG GGAAGATCTGCCCCTTGGAAGCATACACTGGAAGEST: gi|30301103|gb|CB977897.1|CB977897
genomic: CGGACGTTCGAGATGACACTGAGACATTCCTCAGCAAAATAGTTCCAGAGgttaattttt ... ataatttcagGGAAGATCTGCACCTTGGAAGCATACACTGGAAG
EST: CGGACGTTCGAGATGACACTGAGACATTCCTCAGCAAAATAGTTCCAGAG GGAAGATCTGCACCTTGGAAGCATACACTGGAAGEST: gi|26257283|gb|CA808346.1|CA808346
genomic: CGGACGTTCGAGATGACACTGAGACATTCCTCAGCAAAATAGTTCCAGAGgttaattttt ... ataatttcagGGAAGATCTGCACCTTGGAAGCATACACTGGAAG
EST: CGGACGTTCGAGATGACACTGAGACATTCCTCAGCAAAATAGTTCCAGAG GGAAGATCTGCACCTTGGAAGCATACACTGGAAGEST: gi|71856841|gb|DT005896.1|DT005896
genomic: CGGACGTTCGAGATGACACTGAGACATTCCTCAGCAAAATAGTTCCAGAGgttaattttt ... ataatttcagGGAAGATCTGCACCTTGGAAGCATACACTGGAAG
EST: CGGACGTTCGAGATGACACTGAGACATTCCTCAGCAAAATAGTTCCAGAG GGAAGATCTGCACCTTGGAAGCATACACTGGAAGEST: gi|110426779|gb|EC993200.1|EC993200
genomic: CGGACGTTCGAGATGACACTGAGACATTCCTCAGCAAAATAGTTCCAGAGgttaattttt ... ataatttcagGGAAGATCTGCACCTTGGAAGCATACACTGGAAG
EST: CGGACGTTCGAGATGACACTGAGACATTCCTCAGCAAAATAGTTCCAGAG GGAAGATCTGCACCTTGGAAGCATACACTGGAAGEST: gi|110711159|gb|EE087374.1|EE087374
genomic: CGGACGTTCGAGATGACACTGAGACATTCCTCAGCAAAATAGTTCCAGAGgttaattttt ... ataatttcagGGAAGATCTGCACCTTGGAAGCATACACTGGAAG
EST: CGGACGTTCGAGATGACACTGAGACATTCCTCAGCAAAATAGTTCCAGAG GGAAGATCTGCACCTTGGAAGCATACACTGGAAGEST: gi|110425239|gb|EC991621.1|EC991621
genomic: CGGACGTTCGAGATGACACTGAGACATTCCTCAGCAAAATAGTTCCAGAGgttaattttt ... ataatttcagGGAAGATCTGCACCTTGGAAGCATACACTGGAAG
EST: CGGACGTTCGAGATGACACTGAGACATTCCTCAGCAAAATAGTTCCAGAG GGAAGATCTGCACCTTGGAAGCATACACTGGAAGEST: gi|110379372|gb|EC944560.1|EC944560
genomic: CGGACGTTCGAGATGACACTGAGACATTCCTCAGCAAAATAGTTCCAGAGgttaattttt ... ataatttcagGGAAGATCTGCACCTTGGAAGCATACACTGGAAG
EST: CGGACGTTCGAGATGACACTGAGACATTCCTCAGCAAAATAGTTCCAGAG GGAAGATCTGCACCTTGGAAGCATACACTGGAAGEST: gi|30301035|gb|CB977829.1|CB977829
genomic: CGGACGTTCGAGATGACACTGAGACATTCCTCAGCAAAATAGTTCCAGAGgttaattttt ... ataatttcagGGAAGATCTGCACCTTGGAAGCATACACTGGAAG
EST: CGGACGTTCGAGATGACACTGAGACATTCCTCAGCAAAATAGTTCCAGAG GGAAGATCTGCACCTTGGAAGCATACACTGGAAGEST: gi|28960863|gb|CB340439.1|CB340439
genomic: CGGACGTTCGAGATGACACTGAGACATTCCTCAGCAAAATAGTTCCAGAGgttaattttt ... ataatttcagGGAAGATCTGCACCTTGGAAGCATACACTGGAAG
EST: CGGACGTTCGAGATGACACTGAGACATTCCTCAGCAAAATAGTTCCAGAG GAAAGATCTGCACCTTGGAAGCATACACTGGAAGEST: gi|28959155|gb|CB339579.1|CB339579
genomic: CGGACGTTCGAGATGACACTGAGACATTCCTCAGCAAAATAGTTCCAGAGgttaattttt ... ataatttcagGGAAGATCTGCACCTTGGAAGCATACACTGGAAG
EST: GGACGTTCGAGATGACACTGAGACTATTCCTCAGCAAAATAGTTCCAGAG GGAAGATCTGCCCCTTGGAAGCATACACTGGAAGEST: gi|30137614|gb|CB922952.1|CB922952
genomic: GGACGTTCGAGATGACACTGAGAC-ATTCCTCAGCAAAATAGTTCCAGAGgttaattttt ... ataatttcagGGAAGATCTGCACCTTGGAAGCATACACTGGAAG
EST: CGGACGTTCGAGATGACACTGAGACATTCCTCAGCAAAATAGTTCCAGAG GGAAGATCTGCACCTTGGAAGCATACACTGGAAGEST: gi|28959315|gb|CB339658.1|CB339658
genomic: CGGACGTTCGAGATGACACTGAGACATTCCTCAGCAAAATAGTTCCAGAGgttaattttt ... ataatttcagGGAAGATCTGCACCTTGGAAGCATACACTGGAAG
EST: GGACGTTCGAGATGACACTGAGACTATTCCTCAGCAAAATAGTTCCAGAG GGAAGATCTGCACCTTGGAAGCATACACTGGAAGEST: gi|27584720|gb|CB007415.1|CB007415
genomic: GGACGTTCGAGATGACACTGAGAC-ATTCCTCAGCAAAATAGTTCCAGAGgttaattttt ... ataatttcagGGAAGATCTGCACCTTGGAAGCATACACTGGAAG
EST: CGGACGTTCGAGATGACACTGAGACATTCCTCAGCAAAATAGTTCCAGAG GGAAGATCTGCACCTTGGAAGCATACACTGGAAG
genomic: CGGACGTTCGAGATGACACTGAGACATTCCTCAGCAAAATAGTTCCAGAGgttaattttt ... ataatttcagGGAAGATCTGCACCTTGGAAGCATACACTGGAAG
agagtagtttatttgaaaagtgatttttatatggtgtttgattttataatttcagGGAAGATCTGCACCTTGGAAGCATACACTGGAAG
gtttgat putative branch site (score: 5)
atttttatatggtgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaatttttcccttctgtgcttgctttggcagagtagtttatttgaaaagtgatttttatatggtgtttgattttataatttcagGGAAGATCTGCACCTTGGAAGCATACACTGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG