1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aggagtgggaggttcattgttgaggaaggagtttcatagtgcttttctcattttttggatggcttaaccttttgattacatagccttttatcttcaacagCTGGGATGAATGGGTGGGCATGGATCGGCTGCTGAAATTTAGTGAAGAGAATGTCCAAAAACAGAAGGCCCTGGGAAAAAAACAGGGCATAGACAAAAAC
species | Vitis vinifera |
transcript | Vv18s0001g09710.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTCATTACCTTGGTTGGAGCAAAAA CTGGGATGAATGGGTGGGCATGGATCGGCTGCTGAAATTTAGTGAAGAGAAEST: gi|71880779|gb|DT029834.1|DT029834
genomic: TTCATTACCTTGGTTGGAGCAAAAAgtgagtacat ... tcttcaacagCTGGGATGAATGGGTGGGCATGGATCGGCTGCTGAAATTTAGTGAAGAGAA
EST: TTCATTACCTTGGTTGGAGCAAAAA CTGGGATGAATGGGTGGGCATGGATCGGCTGCTGAAATTTAGTGAAGAGAAEST: gi|71859464|gb|DT008519.1|DT008519
genomic: TTCATTACCTTGGTTGGAGCAAAAAgtgagtacat ... tcttcaacagCTGGGATGAATGGGTGGGCATGGATCGGCTGCTGAAATTTAGTGAAGAGAA
EST: TTCATTACCTTGGTTGGAGCAAAAA CTGGGATGAATGGGTGGGCATGGATCGGCTGCTGAAATTTAGTGAAGAGAAEST: gi|27584092|gb|CB006787.1|CB006787
genomic: TTCATTACCTTGGTTGGAGCAAAAAgtgagtacat ... tcttcaacagCTGGGATGAATGGGTGGGCATGGATCGGCTGCTGAAATTTAGTGAAGAGAA
EST: TTCATTACCTTGGTTGGAGCAAAAA CTGGGATGAATGGGTGGGCATGGATCGGCTGCTGAAATTTAGTGAAGAGAAEST: gi|30303537|gb|CB980331.1|CB980331
genomic: TTCATTACCTTGGTTGGAGCAAAAAgtgagtacat ... tcttcaacagCTGGGATGAATGGGTGGGCATGGATCGGCTGCTGAAATTTAGTGAAGAGAA
EST: TTCATTACCTTGGTTGGAGCAAAAA CTGGGATGAATGGGTGGGCATGGATCGGCTGCTGAAATTTAGTGAAGAGAAEST: gi|71880624|gb|DT029679.1|DT029679
genomic: TTCATTACCTTGGTTGGAGCAAAAAgtgagtacat ... tcttcaacagCTGGGATGAATGGGTGGGCATGGATCGGCTGCTGAAATTTAGTGAAGAGAA
EST: TTCATTACCTTGGTTGGAGCAAAAA CTGGGATGAATGGGTGGGCATGGATCGGCTGCTGAAATTTAGTGAAGAGAAEST: gi|71877948|gb|DT027003.1|DT027003
genomic: TTCATTACCTTGGTTGGAGCAAAAAgtgagtacat ... tcttcaacagCTGGGATGAATGGGTGGGCATGGATCGGCTGCTGAAATTTAGTGAAGAGAA
EST: TTCATTACCTTGGTTGGAGCAAAAA CTGGGATGAATGGGTGGGCATGGATCGGCTGCTGAAATTTAGTGAAGAGAAEST: gi|71879457|gb|DT028512.1|DT028512
genomic: TTCATTACCTTGGTTGGAGCAAAAAgtgagtacat ... tcttcaacagCTGGGATGAATGGGTGGGCATGGATCGGCTGCTGAAATTTAGTGAAGAGAA
EST: TTCATTACCTTGGTTGGAGCAAAAA CTGGGATGAATGGGTGGGCATGGATCGGCTGCTGAAATTTAGTGAAGAGAAEST: gi|71878762|gb|DT027817.1|DT027817
genomic: TTCATTACCTTGGTTGGAGCAAAAAgtgagtacat ... tcttcaacagCTGGGATGAATGGGTGGGCATGGATCGGCTGCTGAAATTTAGTGAAGAGAA
EST: TTCATTACCTTGGTTGGAGCAAAAA CTGGGATGAATGGGTGGGCATGGATCGGCTGCTGAAATTTAGTGAAGAGAA
genomic: TTCATTACCTTGGTTGGAGCAAAAAgtgagtacat ... tcttcaacagCTGGGATGAATGGGTGGGCATGGATCGGCTGCTGAAATTTAGTGAAGAGAA
tctcattttttggatggcttaaccttttgattacatagccttttatcttcaacagCTGGGATGAATGGGTGGGCATGGATCGGCTGCTGAAATTTAGTGAAGAGAATGTCCAAAAACAGAAGGCCCTGGGAAAAAAACAGGGCATAGACAAAAAC
ccttttatcttc CT-rich tract
ttttgatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggagtgggaggttcattgttgaggaaggagtttcatagtgcttttctcattttttggatggcttaaccttttgattacatagccttttatcttcaacagCTGGGATGAATGGGTGGGCATGGATCGGCTGCTGAAATTTAGTGAAGAGAATGTCCAAAAACAGAAGGCCCTGGGAAAAAAACAGGGCATAGACAAAAAC
- gagtggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatggct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catagcc