1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgcctaatttcatcctggcttgttttatgtatatatatatatatcatggcttgttgttttcattctcatattagtttatttttatctatgttcaaatctgcagCCAGACTTGAATGTAAGGGAAAAGATTCTAATTTTGATAGATACGTGGCAAGAAGCTTTTGGGGGACCTAGGGGAAGATATCCCCAATACTATGCTGCAT
species | Vitis vinifera |
transcript | Vv18s0001g01180.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGTTGAGCGTGATATCTTACATGAGATGGTCAAAATAGTAAAGAAGAAG CCAGACTTGAATGTAAGGGAAAAGATTCTAATTTTGATAGATACGTGGCAAEST: gi|110697681|gb|EE074884.1|EE074884
genomic: TTGTTGAGCGTGATATCTTACATGAGATGGTCAAAATAGTAAAGAAGAAGgtgcctaatt ... aaatctgcagCCAGACTTGAATGTAAGGGAAAAGATTCTAATTTTGATAGATACGTGGCAA
EST: TTGTTGAGCGTGATATCTTACATGAGATGGTCAAAATAGTAAAGAAGAAG CCAGACTTGAATGTAAGGGAAAAGATTCTAATTTTGATAGATACGTGGCAAEST: gi|77587150|gb|DV222704.1|DV222704
genomic: TTGTTGAGCGTGATATCTTACATGAGATGGTCAAAATAGTAAAGAAGAAGgtgcctaatt ... aaatctgcagCCAGACTTGAATGTAAGGGAAAAGATTCTAATTTTGATAGATACGTGGCAA
EST: TTGTTGAGCGTGATATCTTACATGAGATGGTCAAAATAGTAAAGAAGAAG CCAGACTTGAATGTAAGGGAAAAGATTCTAATTTTGATAGATACGTGGCAAEST: gi|110724482|gb|EE100348.1|EE100348
genomic: TTGTTGAGCGTGATATCTTACATGAGATGGTCAAAATAGTAAAGAAGAAGgtgcctaatt ... aaatctgcagCCAGACTTGAATGTAAGGGAAAAGATTCTAATTTTGATAGATACGTGGCAA
EST: TTGTTGAGCGTGATATCTTACATGAGATGGTCAAAATAGTAAAGAAGAAG CCAGACTTGAATGTAAGGGAAAAGATTCTAATTTTGATAGATACGTGGCAAEST: gi|110696101|gb|EE074878.1|EE074878
genomic: TTGTTGAGCGTGATATCTTACATGAGATGGTCAAAATAGTAAAGAAGAAGgtgcctaatt ... aaatctgcagCCAGACTTGAATGTAAGGGAAAAGATTCTAATTTTGATAGATACGTGGCAA
EST: TTGTTGAGCGTGATATCTTACATGAGATGGTCAAAATAGTAAAGAAGAAG CCAGACTTGAATGTAAGGGAAAAGATTCTAATTTTGATAGATACGTGGCAAEST: gi|161716239|gb|FC066502.1|FC066502
genomic: TTGTTGAGCGTGATATCTTACATGAGATGGTCAAAATAGTAAAGAAGAAGgtgcctaatt ... aaatctgcagCCAGACTTGAATGTAAGGGAAAAGATTCTAATTTTGATAGATACGTGGCAA
EST: TTGTTGAGCGTGATATCTTACATGAGATGGTCAAAATAGTAAAGAAGAAG CCAGACTTGAATGTAAGGGAAAAGATTCTAATTTTGATAGATACGTGGCAAEST: gi|161718465|gb|FC067304.1|FC067304
genomic: TTGTTGAGCGTGATATCTTACATGAGATGGTCAAAATAGTAAAGAAGAAGgtgcctaatt ... aaatctgcagCCAGACTTGAATGTAAGGGAAAAGATTCTAATTTTGATAGATACGTGGCAA
EST: TTGTTGAGCGTGATATCTTACATGAGATGGTCAAAATAGTAAAGAAGAAG CCAGACTTGAATGTAAGGGAAAAGATTCTAATTTTGATAGATACGTGGCAAEST: gi|161708941|gb|FC060484.1|FC060484
genomic: TTGTTGAGCGTGATATCTTACATGAGATGGTCAAAATAGTAAAGAAGAAGgtgcctaatt ... aaatctgcagCCAGACTTGAATGTAAGGGAAAAGATTCTAATTTTGATAGATACGTGGCAA
EST: TTGTTGAGCGTGATATCTTACATGAGATGGTCAAAATAGTAAAGAAGAAG CCAGACTTGAATGTAAGGGAAAAGATTCTAATTTTGATAGATACGTGGCAAEST: gi|161710321|gb|FC059835.1|FC059835
genomic: TTGTTGAGCGTGATATCTTACATGAGATGGTCAAAATAGTAAAGAAGAAGgtgcctaatt ... aaatctgcagCCAGACTTGAATGTAAGGGAAAAGATTCTAATTTTGATAGATACGTGGCAA
EST: TTGTTGAGCGTGATATCTTACATGAGATGGTCAAAATAGTAAAGAAGAAG CCAGACTTGAATGTAAGGGAAAAGATTCTAATTTTGATAGATACGTGGCAAEST: gi|110721049|gb|EE097599.1|EE097599
genomic: TTGTTGAGCGTGATATCTTACATGAGATGGTCAAAATAGTAAAGAAGAAGgtgcctaatt ... aaatctgcagCCAGACTTGAATGTAAGGGAAAAGATTCTAATTTTGATAGATACGTGGCAA
EST: TTGTTGAGCGTGATATCTTACATGAGATGGTCAAAATAGTAAAGAAGAAG CCAGACTTGAATGTAAGGGAAAAGATTCTAATTTTGATAGATACGTGGCAA
genomic: TTGTTGAGCGTGATATCTTACATGAGATGGTCAAAATAGTAAAGAAGAAGgtgcctaatt ... aaatctgcagCCAGACTTGAATGTAAGGGAAAAGATTCTAATTTTGATAGATACGTGGCAA
gcttgttgttttcattctcatattagtttatttttatctatgttcaaatctgcagCCAGACTTGAATGTAAGGGAAAAGATTCTAATTTTGATAGATACGTGGCAAGAAGCTTTTGGGGGACCTAGGGGAAGATATCCCCAATACTATGCTGCAT
atattagtttattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcctaatttcatcctggcttgttttatgtatatatatatatatcatggcttgttgttttcattctcatattagtttatttttatctatgttcaaatctgcagCCAGACTTGAATGTAAGGGAAAAGATTCTAATTTTGATAGATACGTGGCAAGAAGCTTTTGGGGGACCTAGGGGAAGATATCCCCAATACTATGCTGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC