Sequence
atgc intronic sequence ATGC exonic sequence...actaaaaattgatgctattattacattacactgttacatatttattaatttttctgcttgtgagacttgaccaatgaagttctatctttctcttactcagTATGGCTCCTGCTGCACGAATGGCCATGACAAGAAGGGTTCATCCTCTTGTTTCCTTGAATCCTTACCAAGGCAACTGGACGATAAAAGTCCGGCTTACA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g07440.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA17G08660.1 (Glycine max), 3'ss of exon 3
--------------------------------------actaaaaattgatgctattattacattacactgttacatatttattaatttttctgcttgtgagacttgaccaatgaagttctatctt-tctcttactcagTATGGCTCCTGCTGCACGAATGGCCATGACAAGAAGGGTTCATCCTCTTGTTTCCTTGAATCCTTACCAAGGCAACTGGACGATAAAAGTCCGGCTTACA
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gtgagtagtgttattttttgtgatactgttcactgcgttctgagatttaagggctttgtacatttgtttagggtcatgtgt-ttgctttttttttttttcgtttataaattctaacatttactcttattttatttttagTTCGGCTCCTGCTGCACGAATGGCAATGACGCGTAGAGTGCGTCCTCTTGTTTCCTTAAACCCTTATCAGGGTAATTGGACAATAAAGGTTAGCGTTACG
upper sequence: Vv17s0000g07440.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT5G08020.1 (Arabidopsis thaliana), 3'ss of exon 3
actaaaaattgatgctattattacattacactgttacatatttattaatttttctgcttgtgagacttgaccaatgaagttctatctttctcttactcagTATGGCTCCTGCTGCACGAATGGCCATGACAAGAAGGGTTCATCCTCTTGTTTCCTTGAATCCTTACCAAGGCAACTGGACGATAAAAGTCCGGCTTACA
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---gtaagtatatctttttttaacttctgtttgtttcatagtctctgtcgaagttg-ttgtaaatgttgcttaaacaagtc---tctgtggtttttgtagTGCTGCACCTGCTGCAAGAATGGCTATGACCAGAAGGGTTCATCCTCTTGTGTCCTTGAACCCTTATCAAGGAAGTTGGACTATTAAAGTTCGTGTCACT
upper sequence: Vv17s0000g07440.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT5G61000.1 (Arabidopsis thaliana), 3'ss of exon 3
----actaaaaattgatgctattattacattacactgttac-atatttattaatttttctgcttgtgagacttgaccaatgaagttctatctttctcttactcagTATGGCTCCTGCTGCACGAATGGCCATGACAAGAAGGGTTCATCCTCTTGTTTCCTTGAATCCTTACCAAGGCAACTGGACGATAAAAGTCCGGCTTACA
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gtaagcaaattatcttttttgatctt-caatgtttcattactgtctctgtcaaatggttattttattagtgtt--ttgcttaaattcgtttggattttgac--agTGCTGCACCAGCTGCAAGAATGGCCATGACTAGAAGGGTTCATCCACTTGTGTCATTAAATCCATATCAAGGAAACTGGACCATCAAAGTCCGAGTTACAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161719971|gb|FC067720.1|FC067720EST: GAAATAGTTGCTAAATCAGCTGCTCAGATAGTAAATGAACAGCATGGAAA TATGGCTCCTGCTGCACGAATGGCCATGACAAGAAGGGTTCATCCTCTTGT
genomic: GAAATAGTTGCTAAATCAGCTGCTCAGATAGTAAATGAACAGCATGGAAAgtgagtattc ... tcttactcagTATGGCTCCTGCTGCACGAATGGCCATGACAAGAAGGGTTCATCCTCTTGT
EST:
gi|33408705|gb|CF214332.1|CF214332EST: GAAATAGTTGCTAAATCAGCTGCTCAGATAGTAAATGAACAGCATGGAAA TATGGCTCCTGCTGCACGAATGGCCATGACAAGAAGGGTTCATCCTCTTGT
genomic: GAAATAGTTGCTAAATCAGCTGCTCAGATAGTAAATGAACAGCATGGAAAgtgagtattc ... tcttactcagTATGGCTCCTGCTGCACGAATGGCCATGACAAGAAGGGTTCATCCTCTTGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taatttttctgcttgtgagacttgaccaatgaagttctatctttctcttactcagTATGGCTCCTGCTGCACGAATGGCCATGACAAGAAGGGTTCATCCTCTTGTTTCCTTGAATCCTTACCAAGGCAACTGGACGATAAAAGTCCGGCTTACA
ttctatctttctctta CT-rich tract
tatcttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
actaaaaattgatgctattattacattacactgttacatatttattaatttttctgcttgtgagacttgaccaatgaagttctatctttctcttactcagTATGGCTCCTGCTGCACGAATGGCCATGACAAGAAGGGTTCATCCTCTTGTTTCCTTGAATCCTTACCAAGGCAACTGGACGATAAAAGTCCGGCTTACA
- taaaaat
- - - - -tgatgct
- - - - - - - - - - - - - - - ctgttac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaatga