1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgggtatcattccttgaactttctaaatttgctgggtctcccaaatacctattgttagcacttagcagtgggcgaaattttccattctgaattgcattattctgtaacctgcagTGAAATTAAAGAGAGGATCAAGAAAACCAAGGATGAAAAGAAAGCCAAGAAGGCTGAGGTAATGGCCAAGACGCAGAAAACTCAGAGCAAGGGTGTGCCT
species | Vitis vinifera |
transcript | Vv16s0100g00650.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGAACCGAGAAACCTGAAGTTCGAGATGCTGCTAGGGAGGCTGCTCTCCG TGAAATTAAAGAGAGGATCAAGAAAACCAAGGATGAAAAGAAAGCCAAGAAEST: gi|110394381|gb|EC959247.1|EC959247
genomic: AGAACCGAGAAACCTGAAGTTCGAGATGCTGCTAGGGAGGCTGCTCTCCGgtgggtatca ... taacctgcagTGAAATTAAAGAGAGGATCAAGAAAACCAAGGATGAAAAGAAAGCCAAGAA
EST: AGAACCGAGAAACCTGAAGTTCGAGATGCTGCTAGGGAGGCTGCTCTCCG TGAAATTAAAGAGAGGATCAAGAAAACCAAGGATGAAAAGAAAGCCAAGAAEST: gi|110389669|gb|EC954526.1|EC954526
genomic: AGAACCGAGAAACCTGAAGTTCGAGATGCTGCTAGGGAGGCTGCTCTCCGgtgggtatca ... taacctgcagTGAAATTAAAGAGAGGATCAAGAAAACCAAGGATGAAAAGAAAGCCAAGAA
EST: AGAACCGAGAAACCTGAAGTTCGAGATGCTGCTAGGGAGGCTGCTCTCCG TGAAATTAAAGAGAGGATCAAGAAAACCAAGGATGAAAAGAAAGCCAAGAAEST: gi|351021758|gb|FQ437143.1|FQ437143
genomic: AGAACCGAGAAACCTGAAGTTCGAGATGCTGCTAGGGAGGCTGCTCTCCGgtgggtatca ... taacctgcagTGAAATTAAAGAGAGGATCAAGAAAACCAAGGATGAAAAGAAAGCCAAGAA
EST: AGAACCGAGAAACCTGAAGTTCGAGATGCTGCTAGGGAGGCTGCTCTCCG TGAAATTAAAGAGAGGATCAAGAAAACCAAGGATGAAAAGAAAGCCAAGAAEST: gi|71865895|gb|DT014950.1|DT014950
genomic: AGAACCGAGAAACCTGAAGTTCGAGATGCTGCTAGGGAGGCTGCTCTCCGgtgggtatca ... taacctgcagTGAAATTAAAGAGAGGATCAAGAAAACCAAGGATGAAAAGAAAGCCAAGAA
EST: AGAACCGAGAAACCTGAAGTTCGAGATGCTGCTAGGGAGGCTGCTCTCCG TGAAATTAAAGAGAGGATCAAGAAAACCAAGGATGAAAAGAAAGCCAAGAAEST: gi|77586726|gb|DV222495.1|DV222495
genomic: AGAACCGAGAAACCTGAAGTTCGAGATGCTGCTAGGGAGGCTGCTCTCCGgtgggtatca ... taacctgcagTGAAATTAAAGAGAGGATCAAGAAAACCAAGGATGAAAAGAAAGCCAAGAA
EST: AGAACCGAGAAACCTGAAGTTCGAGATGCTGCTAGGGAGGCTGCTCTCCG TGAAATTAAAGAGAGGATCAAGAAAACCAAGGATGAAAAGAAAGCCAAGAAEST: gi|110385691|gb|EC950237.1|EC950237
genomic: AGAACCGAGAAACCTGAAGTTCGAGATGCTGCTAGGGAGGCTGCTCTCCGgtgggtatca ... taacctgcagTGAAATTAAAGAGAGGATCAAGAAAACCAAGGATGAAAAGAAAGCCAAGAA
EST: AGAACCGAGAAACCTGAAGTTCGAGATGCTGCTAGGGAGGCTGCTCTCCG TGAAATTAAAGAGAGGATCAAGAAAACCAAGGATGAAAAGAAAGCCAAGAAEST: gi|71890456|gb|DT039511.1|DT039511
genomic: AGAACCGAGAAACCTGAAGTTCGAGATGCTGCTAGGGAGGCTGCTCTCCGgtgggtatca ... taacctgcagTGAAATTAAAGAGAGGATCAAGAAAACCAAGGATGAAAAGAAAGCCAAGAA
EST: AGAACCGAGAAACCTGAAGTTCGAGATGCTGCTAGGGAGGCTGCTCTCCG TGAAATTAAAGAGAGGATCAAGAAAACCAAGGATGAAAAGAAAGCCAAGAA
genomic: AGAACCGAGAAACCTGAAGTTCGAGATGCTGCTAGGGAGGCTGCTCTCCGgtgggtatca ... taacctgcagTGAAATTAAAGAGAGGATCAAGAAAACCAAGGATGAAAAGAAAGCCAAGAA
acttagcagtgggcgaaattttccattctgaattgcattattctgtaacctgcagTGAAATTAAAGAGAGGATCAAGAAAACCAAGGATGAAAAGAAAGCCAAGAAGGCTGAGGTAATGGCCAAGACGCAGAAAACTCAGAGCAAGGGTGTGCCT
ctgtaac putative branch site (score: 3)
aaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggtatcattccttgaactttctaaatttgctgggtctcccaaatacctattgttagcacttagcagtgggcgaaattttccattctgaattgcattattctgtaacctgcagTGAAATTAAAGAGAGGATCAAGAAAACCAAGGATGAAAAGAAAGCCAAGAAGGCTGAGGTAATGGCCAAGACGCAGAAAACTCAGAGCAAGGGTGTGCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG