1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaaaattttgtctgatttctgttcttgtattcacttgtatcatgaatgttctttaccagtttttcctgggcttggcagATATTATTTTTCATCTCAAAGCCTGATGTCTTCAAGAGTCCAAATTCAGAGACCTATGTCATATTTGGGGAGGCGAAGATAGAGGATTTGAGCTCTCAGC
species | Vitis vinifera |
transcript | Vv16s0098g00830.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGAAACCCGTTACTGGTGTTGGAAGGGTCACCATTAAGAGAACAAAAAAT ATATTATTTTTCATCTCAAAGCCTGATGTCTTCAAGAGTCCAAATTCAGAGEST: gi|110426047|gb|EC992444.1|EC992444
genomic: TGAAACCCGTTACTGGTGTTGGAAGGGTCACCATTAAGAGAACAAAAAATgtaaaatttt ... ggcttggcagATATTATTTTTCATCTCAAAGCCTGATGTCTTCAAGAGTCCAAATTCAGAG
EST: TGAAACCCGTTACTGGTGTTGGAAGGGTCACCATTAAGAGAACAAAAAAT ATATTATTTTTCATCTCAAAGCCTGATGTCTTCAAGAGTCCAAATTCAGAGEST: gi|110388885|gb|EC953683.1|EC953683
genomic: TGAAACCCGTTACTGGTGTTGGAAGGGTCACCATTAAGAGAACAAAAAATgtaaaatttt ... ggcttggcagATATTATTTTTCATCTCAAAGCCTGATGTCTTCAAGAGTCCAAATTCAGAG
EST: TGAAACCCGTTACTGGTGTTGGAAGGGTCACCATTAAGAGAACAAAAAAT ATATTATTTTTCATCTCAAAGCCTGATGTCTTCAAGAGTCCAAATTCAGAG
genomic: TGAAACCCGTTACTGGTGTTGGAAGGGTCACCATTAAGAGAACAAAAAATgtaaaatttt ... ggcttggcagATATTATTTTTCATCTCAAAGCCTGATGTCTTCAAGAGTCCAAATTCAGAG
cttgtattcacttgtatcatgaatgttctttaccagtttttcctgggcttggcagATATTATTTTTCATCTCAAAGCCTGATGTCTTCAAGAGTCCAAATTCAGAGACCTATGTCATATTTGGGGAGGCGAAGATAGAGGATTTGAGCTCTCAGC
ttcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaattttgtctgatttctgttcttgtattcacttgtatcatgaatgttctttaccagtttttcctgggcttggcagATATTATTTTTCATCTCAAAGCCTGATGTCTTCAAGAGTCCAAATTCAGAGACCTATGTCATATTTGGGGAGGCGAAGATAGAGGATTTGAGCTCTCAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT