1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...taatgtggagcacttagcccccctctctcatttttactactaatacatacattagtactgtgatatgattgttttctaactactgagaattgtgtaacagAGAAAATCCAATGAAGCAGAAACTGAGTCTCTGCGAGAGGAATACCATCAAAGAGTAGCAGCTCTTGAAAGGAAG
species | Vitis vinifera |
transcript | Vv16s0098g00540.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGCTGATGAATGAAAATGAGCAGCTAAAAATTGTAAATGAGGATTTGAAG AGAAAATCCAATGAAGCAGAAACTGAGTCTTTGCGAGAGGAATACCATCAA
genomic: AGCTGATGAATGAAAATGAGCAGCTAAAAATTGTAAATGAGGATTTGAAGgtaagaatgg ... tgtgtaacagAGAAAATCCAATGAAGCAGAAACTGAGTCTCTGCGAGAGGAATACCATCAA
catacattagtactgtgatatgattgttttctaactactgagaattgtgtaacagAGAAAATCCAATGAAGCAGAAACTGAGTCTCTGCGAGAGGAATACCATCAAAGAGTAGCAGCTCTTGAAAGGAAG
ttctaac putative branch site (score: 1)
atatgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatgtggagcacttagcccccctctctcatttttactactaatacatacattagtactgtgatatgattgttttctaactactgagaattgtgtaacagAGAAAATCCAATGAAGCAGAAACTGAGTCTCTGCGAGAGGAATACCATCAAAGAGTAGCAGCTCTTGAAAGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - -tggagca
- - - - - - - - - - ccctctc
- - - - - - - - - - - - - - - - - - - - - - acataca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctactga