Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagagtttaaatgctaagttgatgtaatttattatgttgggttgttcattgcattcatatacttaatgtgggattttggaaatctgaccatgacggcatgtgttaaatttcagGTCCGGATCAGTGTGTTTAGATGTTATCAACCAAACCTGGAGCCCTATGTTCG

Basic information

species Vitis vinifera
transcript Vv15s0046g02280.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161706781|gb|FC055498.1|FC055498
EST:     CCCTCAATTGGCTTTGTTAATAAGATCTACCACCCAAATGTTGATGAAAT                         GTCCGGATCAGTGTGTTTAGATGTTATCAACCAAACCTGGAGCCCTATGTT
genomic: CCCTCAATTGGCTTTGTTAATAAGATCTACCACCCAAATGTTGATGAAATgtgagagttt ... taaatttcagGTCCGGATCAGTGTGTTTAGATGTTATCAACCAAACCTGGAGCCCTATGTT
EST: gi|351029514|gb|FQ436908.1|FQ436908
EST:     CCCTCAATTGGCTTTGTTAATAAGATCTACCACCCAAATGTTGATGAAAT                         GTCCGGATCAGTGTGTTTAGATGTTATCAACCAAACCTGGAGCCCTATGTT
genomic: CCCTCAATTGGCTTTGTTAATAAGATCTACCACCCAAATGTTGATGAAATgtgagagttt ... taaatttcagGTCCGGATCAGTGTGTTTAGATGTTATCAACCAAACCTGGAGCCCTATGTT
EST: gi|46918632|gb|CN547961.1|CN547961
EST:     CCCTCAATTGGCTTTGTTAATAAGATCTACCACCCAAATGTTGATGAAAT                         GTCCGGATCAGTGTGTTTAGATGTTATCAACCAAACCTGGAGCCCTATGTT
genomic: CCCTCAATTGGCTTTGTTAATAAGATCTACCACCCAAATGTTGATGAAATgtgagagttt ... taaatttcagGTCCGGATCAGTGTGTTTAGATGTTATCAACCAAACCTGGAGCCCTATGTT
EST: gi|110420607|gb|EC986882.1|EC986882
EST:     CCCTCAATTGGCTTTGTTAATAAGATCTACCACCCAAATGTTGATGAAAT                         GTCCGGATCAGTGTGTTTAGATGTTATCAACCAAACCTGGAGCCCTATGTT
genomic: CCCTCAATTGGCTTTGTTAATAAGATCTACCACCCAAATGTTGATGAAATgtgagagttt ... taaatttcagGTCCGGATCAGTGTGTTTAGATGTTATCAACCAAACCTGGAGCCCTATGTT
EST: gi|34550367|gb|CF518585.1|CF518585
EST:     CCCTCAATTGGCTTTGTTAATAAGATCTACCACCCAAATGTTGATGAAAT                         GTCCGGATCAGTGTGTTTAGATGTTATCAACCAAACCTGGAGCCCTATGTT
genomic: CCCTCAATTGGCTTTGTTAATAAGATCTACCACCCAAATGTTGATGAAATgtgagagttt ... taaatttcagGTCCGGATCAGTGTGTTTAGATGTTATCAACCAAACCTGGAGCCCTATGTT
EST: gi|83274683|gb|DV938779.1|DV938779
EST:     CCCTCAATTGGCTTTGTTAATAAGATCTACCACCCAAATGTTGATGAAAT                         GTCCGGATCAGTGTGTTTAGATGTTATCAACCAAACCTGGAGCCCTATGTT
genomic: CCCTCAATTGGCTTTGTTAATAAGATCTACCACCCAAATGTTGATGAAATgtgagagttt ... taaatttcagGTCCGGATCAGTGTGTTTAGATGTTATCAACCAAACCTGGAGCCCTATGTT
EST: gi|351037950|gb|FQ465188.1|FQ465188
EST:     CCCTCAATTGGCTTTGTTAATAAGATCTACCACCCAAATGTTGATGAAAT                         GTCCGGATCAGTGTGTTTAGATGTTATCAACCAAACCTGGAGCCCTATGTT
genomic: CCCTCAATTGGCTTTGTTAATAAGATCTACCACCCAAATGTTGATGAAATgtgagagttt ... taaatttcagGTCCGGATCAGTGTGTTTAGATGTTATCAACCAAACCTGGAGCCCTATGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atacttaatgtgggattttggaaatctgaccatgacggcatgtgttaaatttcagGTCCGGATCAGTGTGTTTAGATGTTATCAACCAAACCTGGAGCCCTATGTTCG
                       atctgac  putative branch site (score: 3)
                                          tgttaaattt  TA-rich tract