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...tatgcccattctatcattttaaatgatttgcttatttatgaaaagggactttttggcttcatatctttgcctgctccaccttcttttgtggcatatacagGTACTTGTTGAATTGGCTGAACTTCAGGACCGAGAAGTTGGGGATGGGACAACTTCAGTGGTTATTGTTGCTGCAGAGTTGCTTAAG
species | Vitis vinifera |
transcript | Vv15s0021g02230.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGGTGCTACAATACTCAAGATGTTGGAAGTTGAGCATCCAGCTGCCAAG GTACTTGTTGAATTGGCTGAACTTCAGGACCGAGAAGTTGGGGATGGGACAEST: gi|110691850|gb|EE070424.1|EE070424
genomic: ATGGTGCTACAATACTCAAGATGTTGGAAGTTGAGCATCCAGCTGCCAAGgtaggattaa ... gcatatacagGTACTTGTTGAATTGGCTGAACTTCAGGACCGAGAAGTTGGGGATGGGACA
EST: ATGGCGCTACAATACTCAAGATGTTGGAAGTTGAGCATCCAGCTGCCAAG GTACTTGTTGAATTGGCTGAACTTCAGGACCGAGAAGTTGGGGATGGGACAEST: gi|351026648|gb|FQ436301.1|FQ436301
genomic: ATGGTGCTACAATACTCAAGATGTTGGAAGTTGAGCATCCAGCTGCCAAGgtaggattaa ... gcatatacagGTACTTGTTGAATTGGCTGAACTTCAGGACCGAGAAGTTGGGGATGGGACA
EST: ATGGTGCTACAATACTCAAGATGTTGGAAGTTGAGCATCCAGCTGCCAAG GTACTTGTTGAATTGGCTGAACTTCAGGACCGAGAAGTTGGGGATGGGACA
genomic: ATGGTGCTACAATACTCAAGATGTTGGAAGTTGAGCATCCAGCTGCCAAGgtaggattaa ... gcatatacagGTACTTGTTGAATTGGCTGAACTTCAGGACCGAGAAGTTGGGGATGGGACA
ggactttttggcttcatatctttgcctgctccaccttcttttgtggcatatacagGTACTTGTTGAATTGGCTGAACTTCAGGACCGAGAAGTTGGGGATGGGACAACTTCAGTGGTTATTGTTGCTGCAGAGTTGCTTAAG
atatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgcccattctatcattttaaatgatttgcttatttatgaaaagggactttttggcttcatatctttgcctgctccaccttcttttgtggcatatacagGTACTTGTTGAATTGGCTGAACTTCAGGACCGAGAAGTTGGGGATGGGACAACTTCAGTGGTTATTGTTGCTGCAGAGTTGCTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - cccattc
- - - - - - - - - - - - - - - - - - -atgaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - -tggcttc