Sequence
atgc intronic sequence ATGC exonic sequence...gtatctttgttgctgccttaactcgtaaaatgcattacactctctttcctcttggttccttgaaaaattgtaaataaaaatcttgttttaaaatgcacagGTGGTGAATCCGTGACAAGGGAAGATATAATGGAAGCTATAGAAAGAGCAAGGTTTGGGATCAACGATAAGCAGTCAAATCCTAGTACAATAAGCAGGGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0083g00530.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA19G05370.1 (Glycine max), 3'ss of exon 6
gtatctttgttgctgccttaactcgtaaaatgcattacactctctttcctc--ttggttccttg-aaaaattgtaaataaaaatcttgttttaaaatgcacagGTGGTGAATCCGTGACAAGGGAAGATATAATGGAAGCTATAGAAAGAGCAAGGTTTGGGATCAACGATAAGCAGTCAAATCCTAGTACAATAAGCAGGGA
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---tgcttctctttgccttcattgacaacttcttttagtttgcatttgtttaaacaatgatatgtatacacttcaatcatatgtatatatttggactttgcagGTAGTGAAACTGTGGCAAGGGAAGATATAATGGAAGCTATGGAAAGAGCAAAATTCGGAATCAGTGATAAACAATTGAGGTCAAGTAAAATAAGCAAGGA
upper sequence: Vv14s0083g00530.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA13G07100.1 (Glycine max), 3'ss of exon 4
--gtatctttgttgctgccttaactcgtaaaatgcattacactctctttcctcttggttccttgaaaaattgtaaataaaaatcttgttttaaaatgcacagGTGGTGAATCCGTGACAAGGGAAGATATAATGGAAGCTATAGAAAGAGCAAGGTTTGGGATCAACGATAAGCAGTCAAATCCTAGTACAATAAGCAGGGA
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cttttagtttgcttttgcttaaaca-atgaaatgtat-acactttcaagtctgctgaatttaggagtgaccagtaagtcatgtatatatttggactttgcagGTAGTGAAACTGTGGCAAGGGAAGATATAATGGAAGCTATTGAAAGAGCGAAATTCGGAATCAATGACGAACAATTGAGGTCTAGTAAAATAAGCAAGGA
upper sequence: Vv14s0083g00530.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT3G02450.1 (Arabidopsis thaliana), 3'ss of exon 3
-----------------------gtatctttgttgctgccttaactcgtaaaatgcattacactctctttcctcttggttccttgaa---aaattgta-----------aataaaaatc-----ttgttttaaaatgcacagGTGGTGAATCCGTGACAAGGGAAGATATAATGGAAGCTATAGAAAGAGCAAGGTTTGGGATCAACGATAAGCAGTCAAATCCTAGTACAATAAGCAGGGA
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gtcagtctttaagtgatcttttaacagccct-ttcttgatttaagtagttattcgatctggttgcttcccaggtttgatcttttgggatgaagctgcggtttttggcttaacagacactagcgatttcttgattgttttcagGCGGAGAAGCGGTGGCACGGGAAGATATAATGGAAGCTATAGAGAGAGCGAAGTTCGGGATCAATGATAAGGAAGCGAGGCCAAGGACGTTAGGAAATGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcctcttggttccttgaaaaattgtaaataaaaatcttgttttaaaatgcacagGTGGTGAATCCGTGACAAGGGAAGATATAATGGAAGCTATAGAAAGAGCAAGGTTTGGGATCAACGATAAGCAGTCAAATCCTAGTACAATAAGCAGGGA
ttgaaaaattgtaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatctttgttgctgccttaactcgtaaaatgcattacactctctttcctcttggttccttgaaaaattgtaaataaaaatcttgttttaaaatgcacagGTGGTGAATCCGTGACAAGGGAAGATATAATGGAAGCTATAGAAAGAGCAAGGTTTGGGATCAACGATAAGCAGTCAAATCCTAGTACAATAAGCAGGGA
- - - - - -gctgcct
- - - - - - - - - - - - - - aatgcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataaa