Sequence
atgc intronic sequence ATGC exonic sequence...aactttctgcaaatagagcttgtttttatcattgagtattattggatgaataagatgcatttctttgtagtgtaatcttttctaaatttccatggttcagAATTGGTGAAGCTGGTTGAAAGAACAGTTAGGTCAGAGAATTACCGTTCACCAAATAAACCCATATACCTAGTCGGAGAATCTCTCGGAGGATGCCTTGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0068g01430.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA19G27200.1 (Glycine max), 3'ss of exon 3
aactttctgcaaatagagcttgtttttatcattgagt-attattggatgaataagatgcatttctttgtagtgtaatcttttctaaatttccatggttcagAATTGGTGAAGCTGGTTGAAAGAACAGTTAGGTCAGAGAATTACCGTTCACCAAATAAACCCATATACCTAGTCGGAGAATCTCTCGGAGGATGCCTTGC
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-atcacatgttctttcttccttacattttcagaaaattgatgtagcctttcagcaatgtattcgagcataatttattgttctgtatacttcccacttgcagATCTTCTAAAAATAGTTGAGAGAACAGTTAGGTCAGAACATCAACGTTCACCAAATAGACCCATATATCTTGTTGGGGAATCTTTAGGAGCATGCCTTGC
upper sequence: Vv14s0068g01430.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA16G05580.2 (Glycine max), 3'ss of exon 3
aactttctgcaaatagagcttgtttttatcatt-gagtattattgg-atgaataag--atgcatttctttgtagtgtaatc-ttttctaaatttccatggttcagAATTGGTGAAGCTGGTTGAAAGAACAGTTAGGTCAGAGAATTACCGTTCACCAAATAAACCCATATACCTAGTCGGAGAATCTCTCGGAGGATGCCTTGC
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-----tcacatgctttttcttctttacatcttcagaaaattgatgtcgtttttcagttatgtatcccagcataatttgtttgttctgtatacttccttcttgcagACCTAGTGAAAATAGTTGAGAGAACAGTTAGGTCAGAATATCAACGTTCACCAAACAGACCCATATATCTTGTTGGAGAATCTTTAGGAGCTTGCCTTGC
upper sequence: Vv14s0068g01430.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT5G41130.2 (Arabidopsis thaliana), 3'ss of exon 3
--aactttctgcaaatagagcttgtttttatcattgagtattattggatgaataagatgcatttctttgtagtgtaatcttttctaaatttccatggttcagAATTGGTGAAGCTGGTTGAAAGAACAGTTAGGTCAGAGAATTACCGTTCACCAAATAAACCCATATACCTAGTCGGAGAATCTCTCGGAGGATGCCTTGC
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gtgcttctttgtcagcattctctgttgtt-tcagtacggatcccaaaccaaatggattaatgttatgtgga-tgaaactcttgctgttgtt------ttcagATCTTGTGAAGCTCATTGAGAGAACAGTTAGGTCAGAGTACTTCCGTTTACCAAAGAGACCCATATACATAGTTGGAGAATCTATTGGAGCTTGTCTTGC
upper sequence: Vv14s0068g01430.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT3G26820.1 (Arabidopsis thaliana), 3'ss of exon 4
aactttctgcaaatagagcttgtttttatcat-tgagtattattggatgaataagatgcatttctttgtagtgtaatcttttctaaatttccatggttcagAATTGGTGAAGCTGGTTGAAAGAACAGTTAGGTCAGAGAATTACCGTTCACCAAATAAACCCATATACCTAGTCGGAGAATCTCTCGGAGGATGCCTTGC
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------gtgcctttataacccccttgtaaagtaccaaaatggctatttaactgagaagatagctaatcccgtttaaacctttttgtgtgt-----gtttagACTTGGTGAAGCTTATTGAGAGGACAGTTAAGTCGGAGAACTACCGTTTCCCAAATAGACCAATATATTTAGTTGGAGAATCTATTGGAGCATGTCTTGC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atgaataagatgcatttctttgtagtgtaatcttttctaaatttccatggttcagAATTGGTGAAGCTGGTTGAAAGAACAGTTAGGTCAGAGAATTACCGTTCACCAAATAAACCCATATACCTAGTCGGAGAATCTCTCGGAGGATGCCTTGC
ttctaaa putative branch site (score: 2)
tttccat CT-rich tract
taatcttttctaaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aactttctgcaaatagagcttgtttttatcattgagtattattggatgaataagatgcatttctttgtagtgtaatcttttctaaatttccatggttcagAATTGGTGAAGCTGGTTGAAAGAACAGTTAGGTCAGAGAATTACCGTTCACCAAATAAACCCATATACCTAGTCGGAGAATCTCTCGGAGGATGCCTTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- -tttctgc
- - - - - aaataga
- - - - - - - - - - - - - - - - - - - - - - - - aataaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatttc