1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ctgaacttcactcgtggtataaaaccttgctccaaatttgtgcatgacagtgagattccatttccattactgaagagcatttattgttctccttttgcagGCAAATAGTGGGCCAGGTACCAATGGTTGTCAG
species | Vitis vinifera |
transcript | Vv13s0084g00620.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGGATGAAAATTTTATTGCTAAACACACTGGTCCTGGTCTCTTGTCAATG GCAAATAGTGGGCCAGGTACCAATGGTTGTCAGEST: gi|110369676|gb|EC933841.1|EC933841
genomic: AGGATGAAAATTTTATTGCTAAACACACTGGTCCTGGTCTCTTGTCAATGgtattcattt ... ccttttgcagGCAAATAGTGGGCCAGGTACCAATGGTTGTCAG
EST: AGGATGAAAATTTTATTGCTAAACACACTGGTCCTGGTCTCTTGTCAATG GCAAATAGTGGGCCAGGTACCAATGGTTGTCAGEST: gi|32459581|gb|CD800755.1|CD800755
genomic: AGGATGAAAATTTTATTGCTAAACACACTGGTCCTGGTCTCTTGTCAATGgtattcattt ... ccttttgcagGCAAATAGTGGGCCAGGTACCAATGGTTGTCAG
EST: AGGATGAAAATTTTATTGCTAAACACACTGGTCCTGGTCTCTTGTCAATG GCAAATAGTGGGCCAGGTACCAATGGTTGTCAGEST: gi|30330499|gb|CD013761.1|CD013761
genomic: AGGATGAAAATTTTATTGCTAAACACACTGGTCCTGGTCTCTTGTCAATGgtattcattt ... ccttttgcagGCAAATAGTGGGCCAGGTACCAATGGTTGTCAG
EST: AGGATGAAAATTTTATTGCTAAACACACTGGTCCTGGTCTCTTGTCAATG GCAAATAGTGGGCCAGGTACCAATGGTTGTCAGEST: gi|30330447|gb|CD013709.1|CD013709
genomic: AGGATGAAAATTTTATTGCTAAACACACTGGTCCTGGTCTCTTGTCAATGgtattcattt ... ccttttgcagGCAAATAGTGGGCCAGGTACCAATGGTTGTCAG
EST: AGGATGAAAATTTTATTGCTAAACACACTGGTCCTGGTCTCTTGTCAATG GCAAATAGTGGGCCAGGTACCAATGGTTGTCAGEST: gi|22009195|gb|BQ794229.1|BQ794229
genomic: AGGATGAAAATTTTATTGCTAAACACACTGGTCCTGGTCTCTTGTCAATGgtattcattt ... ccttttgcagGCAAATAGTGGGCCAGGTACCAATGGTTGTCAG
EST: TGGTCCTGGTCTCTTGTCAATG GCAAATAGTGGGCCAGGTACCAATGGTTGTCAGEST: gi|71890647|gb|DT039702.1|DT039702
genomic: TGGTCCTGGTCTCTTGTCAATGgtattcattt ... ccttttgcagGCAAATAGTGGGCCAGGTACCAATGGTTGTCAG
EST: AGGATGAAAATTTTATTGCTAAACACACTGGTCCTGGTCTCTTGTCAATG GCAAATAGTGGGCCAGGTACCAATGGTTGTCAGEST: gi|27586714|gb|CB009409.1|CB009409
genomic: AGGATGAAAATTTTATTGCTAAACACACTGGTCCTGGTCTCTTGTCAATGgtattcattt ... ccttttgcagGCAAATAGTGGGCCAGGTACCAATGGTTGTCAG
EST: AGGATGAAAATTTTATTGCTAAACACACTGGTCCTGGTCTCTTGTCAATG GCAAATAGTGGGCCAGGTACCAATGGTTGTCAGEST: gi|110397718|gb|EC963561.1|EC963561
genomic: AGGATGAAAATTTTATTGCTAAACACACTGGTCCTGGTCTCTTGTCAATGgtattcattt ... ccttttgcagGCAAATAGTGGGCCAGGTACCAATGGTTGTCAG
EST: AGGATGAAAATTTTATTGCTAAACACACTGGTCCTGGTCTCTTGTCAATG GCAAATAGTGGGCCAGGTACCAATGGTTGTCAGEST: gi|110377315|gb|EC942381.1|EC942381
genomic: AGGATGAAAATTTTATTGCTAAACACACTGGTCCTGGTCTCTTGTCAATGgtattcattt ... ccttttgcagGCAAATAGTGGGCCAGGTACCAATGGTTGTCAG
EST: AGGATGAAAATTTTATTGCTAAACACACTGGTCCTGGTCTCTTGTCAATG GCAAATAGTGGGCCAGGTACCAATGGTTGTCAGEST: gi|71875212|gb|DT024267.1|DT024267
genomic: AGGATGAAAATTTTATTGCTAAACACACTGGTCCTGGTCTCTTGTCAATGgtattcattt ... ccttttgcagGCAAATAGTGGGCCAGGTACCAATGGTTGTCAG
EST: AGGATGAAAATTTTATTGCTAAACACACTGGTCCTGGTCTCTTGTCAATG GCAAATAGTGGGCCAGGTACCAATGGTTGTCAGEST: gi|71871923|gb|DT020978.1|DT020978
genomic: AGGATGAAAATTTTATTGCTAAACACACTGGTCCTGGTCTCTTGTCAATGgtattcattt ... ccttttgcagGCAAATAGTGGGCCAGGTACCAATGGTTGTCAG
EST: AGGATGAAAATTTTATTGCTAAACACACTGGTCCTGGTCTCTTGTCAATG GCAAATAGTGGGCCAGGTACCAATGGTTGTCAGEST: gi|110421609|gb|EC987908.1|EC987908
genomic: AGGATGAAAATTTTATTGCTAAACACACTGGTCCTGGTCTCTTGTCAATGgtattcattt ... ccttttgcagGCAAATAGTGGGCCAGGTACCAATGGTTGTCAG
EST: AGGATGAAAATTTTATTGCTAAACACACTGGTCCTGGTCTCTTGTCAATG GCAAATAGTGGGCCAGGTACCAATGGTTGTCAGEST: gi|110408091|gb|EC973714.1|EC973714
genomic: AGGATGAAAATTTTATTGCTAAACACACTGGTCCTGGTCTCTTGTCAATGgtattcattt ... ccttttgcagGCAAATAGTGGGCCAGGTACCAATGGTTGTCAG
EST: AGGATGAAAATTTTATTGCTAAACACACTGGTCCTGGTCTCTTGTCAATG GCAAATAGTGGGCCAGGTACCAATGGTTGTCAGEST: gi|32459126|gb|CD800300.1|CD800300
genomic: AGGATGAAAATTTTATTGCTAAACACACTGGTCCTGGTCTCTTGTCAATGgtattcattt ... ccttttgcagGCAAATAGTGGGCCAGGTACCAATGGTTGTCAG
EST: AGGATGAAAATTTTATTGCTAAACACACTGGTCCTGGTCTCTTGTCAATG GCAAATAGTGGGCCAGGTACCAATGGTTGTCAGEST: gi|71876171|gb|DT025226.1|DT025226
genomic: AGGATGAAAATTTTATTGCTAAACACACTGGTCCTGGTCTCTTGTCAATGgtattcattt ... ccttttgcagGCAAATAGTGGGCCAGGTACCAATGGTTGTCAG
EST: AGGATGAAAATTTTATTGCTAAACACACTGGTCCTGGTCTCTTGTCAATG GCAAATAGTGGGCCAGGTACCAATGGTTGTCAG
genomic: AGGATGAAAATTTTATTGCTAAACACACTGGTCCTGGTCTCTTGTCAATGgtattcattt ... ccttttgcagGCAAATAGTGGGCCAGGTACCAATGGTTGTCAG
gacagtgagattccatttccattactgaagagcatttattgttctccttttgcagGCAAATAGTGGGCCAGGTACCAATGGTTGTCAG
tttattgttctccttt CT-rich tract
atttattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgaacttcactcgtggtataaaaccttgctccaaatttgtgcatgacagtgagattccatttccattactgaagagcatttattgttctccttttgcagGCAAATAGTGGGCCAGGTACCAATGGTTGTCAG
- - acttcac
- - - - - - - - - -taaaacc
- - - - - - - - - - - - - - gctccaa
- - - - - - - - - - - - - - - - - - - - -gcatgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaagagca