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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcactagcctataatgattatcacatgcttattggtgcccttcaaatgataaaatttatcatatgcttgtttgttggtattggcactatggttaagtatttatgttgtacatattgatcctaacttgtttgttattacttatagGATGGGCATCTTCGAATCTTAGAGTGGCCGAGCATGCAAATCATTTTAGATGAACCAAGAGCCCACAATTCCTTCCGAGATATGGATTTTAG

Basic information

species Vitis vinifera
transcript Vv13s0074g00010.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161715227|gb|FC066443.1|FC066443
EST:     AATGCCTAGCTTTTAGTGTTGAGGGATCTAGATTTGCCACTGGTGGGGTG                         GATGGGCATCTTCGAATCTTACAGTGGCCGAGCATGCAAATCATTTTAGAT
genomic: AATGCCTAGCTTTTAGTGTTGAGGGATCTAGATTTGCCACTGGTGGGGTGgtaagcacta ... ttacttatagGATGGGCATCTTCGAATCTTAGAGTGGCCGAGCATGCAAATCATTTTAGAT
EST: gi|294967128|gb|GW840003.1|GW840003
EST:     AATGCCTAGCTTTTAGTGTTGAGGGATCTAGATTTGCCACTGGTGGGGTG                         GATGGGCATCTTCGAATCTTAGAGTGGCCGAGCATGAAAATCATTTTAGAT
genomic: AATGCCTAGCTTTTAGTGTTGAGGGATCTAGATTTGCCACTGGTGGGGTGgtaagcacta ... ttacttatagGATGGGCATCTTCGAATCTTAGAGTGGCCGAGCATGCAAATCATTTTAGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttaagtatttatgttgtacatattgatcctaacttgtttgttattacttatagGATGGGCATCTTCGAATCTTAGAGTGGCCGAGCATGCAAATCATTTTAGATGAACCAAGAGCCCACAATTCCTTCCGAGATATGGATTTTAG
                            tcctaac  putative branch site (score: 1)
                                      tttgttattacttata  TA-rich tract