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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgcttaatttatgttttctttctttggatgctgaaacttgtcgggttctggacttcatttttgtgattccctcaacgatagggaccataatctgatgtagagaatatctgatcgattttgcatagGCCCGGTGGAGCTAGCTGCTGTGGGAGTTTCCATTGCTATCTTCAATCAAGCTTCAAGGATAACTGTATTCCCACTTGTCAGTATCACAACTTCTTTTGT

Basic information

species Vitis vinifera
transcript Vv13s0064g00940.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0064g00940.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA12G36610.1 (Glycine max), 3'ss of exon 1
gtctgcttaatttatgttttctttctttggatgctgaaacttgtcgggttctggacttcatttttgtgattccctcaacgatagggaccataatct---gatgtagagaatatctgatcgattttgcatagGCCCGGTGGAGCTAGCTGCTGTGGGAGTTTCCATTGCTATCTTCAATCAAGCTTCAAGGATAACTGTATTCCCACTTGTCAGTATCACAACTTCTTTTGT
                          |||  |  | ||          |||     || | ||    || |     ||| | |   |   ||   |    |  || | ||  ||   |    | |  ||||| ||||| ||||| |||||||  ||||||||||||||| | ||||| |||||||||||||| ||  ||||||| ||||||||||| |||||||| |||||
--------------------------ttgccttataaa-----caaaattcatagttttaattaaaagaattttgtaacaagaatcattttagcttttgaagatatataacttcctttttcatctatatagGACCGGTAGAGCTTGCTGCTGCAGGAGTTTCCATTGCTTTATTCAACCAAGCTTCAAGGATTACCATATTCCCTCTTGTCAGTATTACAACTTCCTTTGT

upper sequence: Vv13s0064g00940.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA09G15550.1 (Glycine max), 3'ss of exon 3
gtctgcttaatttatgttttctttctttggatgctgaaacttgtcgggttctggacttcatttttgtgattccctcaacgatagggaccataatctgatgtagagaatatctgatcgat--tttgcatagGCCCGGTGGAGCTAGCTGCTGTGGGAGTTTCCATTGCTATCTTCAATCAAGCTTCAAGGATAACTGTATTCCCACTTGTCAGTATCACAACTTCTTTTGT
                        ||       |  |    | |    |   |   | ||  |    || ||  |  |  |  |  ||     | | | |   |  |  | ||||   |  | ||  |||| || |||||||| |||||||  ||||| ||||||||| | ||||| |||||||||||||| ||  | |||||  | || || ||||||||||| || ||
------------------------ctacaaggacctatgtatattaa-taacgacttacagctcaaagagtcattttaatactgtaac-----ttttaagctaattacttttgattattgatgtgtttagGGCCCGTGGAGCTTGCTGCTGCAGGAGTGTCCATTGCTTTGTTCAACCAAGCTTCAAGGATTACCATCTTCCCTTTGGTTAGCATCACAACTTCCTTCGT

upper sequence: Vv13s0064g00940.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA15G43020.1 (Glycine max), 3'ss of exon 3
gtctgcttaatttatgttttctttctttggatgctgaaacttgtcgggttctggacttcatttttgtgattccctcaacgatagggaccataatctgatgtagagaatatctgatcgattttgcatagGCCCGGTGGAGCTAGCTGCTGTGGGAGTTTCCATTGCTATCTTCAATCAAGCTTCAAGGATAACTGTATTCCCACTTGTCAGTATCACAACTTCTTTTGT
   | || |||    ||    | |   |   |  | |||| |     |      | || | |  | | | |   | | |           |||  |    |      |||         | ||  |||| || |||||||| ||||| |  ||||| ||||||||| | ||||| |||||||||||||||||  | |||||  | || || ||||||||||| |||||
---tcctaaatgagggtcacttataaataattaataaaacctaataagagtc--attttaatactatcactttttaagc-----------taacttttcat------tattca------tgtgtttagGGCCCGTGGAGCTTGCTGCCGCAGGAGTGTCCATTGCTTTGTTCAACCAAGCTTCAAGGATAACCATCTTCCCTTTGGTTAGCATCACAACTTCCTTTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcaacgatagggaccataatctgatgtagagaatatctgatcgattttgcatagGCCCGGTGGAGCTAGCTGCTGTGGGAGTTTCCATTGCTATCTTCAATCAAGCTTCAAGGATAACTGTATTCCCACTTGTCAGTATCACAACTTCTTTTGT
                                   atctgat  putative branch site (score: 4)
                ataatct  TA-rich tract