1 5' 3' | 2 5' 3' | 3 5' 3' |
...actgaatgccaaaattttatgaagaaatttaggcactctcttcatggtttaaagggatattttacttttccattaacaatcaattgttcaaatctttcagAGAGGTGATTCAAAACATGAAGCAATGAGCAACGAGTGGTTAGAAACTGGAAACTGCCCAATTGCCAAGTCATACCGGGCTGTGAGCCATGTCATCCCAA
species | Vitis vinifera |
transcript | Vv13s0019g03990.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGAATCAGAAAAGGGAATCGAAATCATCTAAGAAAGAGCCTTCTTCTCAG AGAGGTGATTCAAAACATGAAGCAATGAGCAACGAGTGGCTAGAAACTGGAEST: gi|352787123|gb|FQ477743.1|FQ477743
genomic: AGAATCAGAAAAGGGAATCGAAATCATCTAAGAAAGAGCCTTCTTCTCAGgtagataatt ... aatctttcagAGAGGTGATTCAAAACATGAAGCAATGAGCAACGAGTGGTTAGAAACTGGA
EST: AGAATCAGAAAAGGGAATCGAAATCATCTAAGAAAGAGCCTTCTTCTCAG AGAGGTGATTCAAAACATGAAGCAATGAGCAACGAGTGGCTAGAAACTGGAEST: gi|110363001|gb|EC926566.1|EC926566
genomic: AGAATCAGAAAAGGGAATCGAAATCATCTAAGAAAGAGCCTTCTTCTCAGgtagataatt ... aatctttcagAGAGGTGATTCAAAACATGAAGCAATGAGCAACGAGTGGTTAGAAACTGGA
EST: AGAATCAGAAAAGGGAATCGAAATCATCTAAGAAAGAGCCTTCTTCTCAG AGAGGTGATTCAAAACATGAAGCAATGAGCAACGAGTGGCTAGAAACTGGAEST: gi|351024673|gb|FQ433088.1|FQ433088
genomic: AGAATCAGAAAAGGGAATCGAAATCATCTAAGAAAGAGCCTTCTTCTCAGgtagataatt ... aatctttcagAGAGGTGATTCAAAACATGAAGCAATGAGCAACGAGTGGTTAGAAACTGGA
EST: AGAATCAGAAAAGGGAATCGAAATCATCTAAGAAAGAGCCTTCTTCTCAG AGAGGTGATTCAAAACATGAAGCAATGAGCAACGAGTGGCTAGAAACTGGAEST: gi|71860360|gb|DT009415.1|DT009415
genomic: AGAATCAGAAAAGGGAATCGAAATCATCTAAGAAAGAGCCTTCTTCTCAGgtagataatt ... aatctttcagAGAGGTGATTCAAAACATGAAGCAATGAGCAACGAGTGGTTAGAAACTGGA
EST: AGAATCAGAAAAGGGAATCGAAATCATCTAAGAAAGAGCCTTCTTCTCAG AGAGGTGATTCAAAACATGAAGCAATGAGCAACGAGTGGCTAGAAACTGGAEST: gi|26263719|gb|CA814782.1|CA814782
genomic: AGAATCAGAAAAGGGAATCGAAATCATCTAAGAAAGAGCCTTCTTCTCAGgtagataatt ... aatctttcagAGAGGTGATTCAAAACATGAAGCAATGAGCAACGAGTGGTTAGAAACTGGA
EST: AGAATCAGAAAAGGGAATCGAAATCATCTAAGAAAGAGCCTTCTTCTCAG AGAGGTGATTCAAAACATGAAGCAATGAGCAACGAGTGGCTAGAAACTGGAEST: gi|71865159|gb|DT014214.1|DT014214
genomic: AGAATCAGAAAAGGGAATCGAAATCATCTAAGAAAGAGCCTTCTTCTCAGgtagataatt ... aatctttcagAGAGGTGATTCAAAACATGAAGCAATGAGCAACGAGTGGTTAGAAACTGGA
EST: AGAATCAGAAAAGGGAATCGAAATCATCTAAGAAAGAGCCTTCTTCTCAG AGAGGTGATTCAAAACEST: gi|110698137|gb|EE075803.1|EE075803
genomic: AGAATCAGAAAAGGGAATCGAAATCATCTAAGAAAGAGCCTTCTTCTCAGgtagataatt ... aatctttcagAGAGGTGATTCAAAAC
EST: AGAATCAGAAAAGGGAATCGAAATCATCTAAGAAAGAGCCTTCTTCTCAG AGAGGTGATTCAAAACATGAAGCAATGAGCAACGAGTGGCTAGAAACTGGAEST: gi|161719344|gb|FC068284.1|FC068284
genomic: AGAATCAGAAAAGGGAATCGAAATCATCTAAGAAAGAGCCTTCTTCTCAGgtagataatt ... aatctttcagAGAGGTGATTCAAAACATGAAGCAATGAGCAACGAGTGGTTAGAAACTGGA
EST: AGAATCAGAAAAGGGAATCGAAATCATCTAAGAAAGAGCCTTCTTCTCAG AGAGGTGATTCAAAACATGAAGCAATGAGCAACGAGTGGCTAGAAACTGGAEST: gi|33409872|gb|CF215499.1|CF215499
genomic: AGAATCAGAAAAGGGAATCGAAATCATCTAAGAAAGAGCCTTCTTCTCAGgtagataatt ... aatctttcagAGAGGTGATTCAAAACATGAAGCAATGAGCAACGAGTGGTTAGAAACTGGA
EST: AGAATCAGAAAAGGGAATCGAAATCATCTAAGAAAGAGCCTTCTTCTCAG AGAGGTGATTCAAAACATGAAGCAATGAGCAACGAGTGGCTAGAAACTGGA
genomic: AGAATCAGAAAAGGGAATCGAAATCATCTAAGAAAGAGCCTTCTTCTCAGgtagataatt ... aatctttcagAGAGGTGATTCAAAACATGAAGCAATGAGCAACGAGTGGTTAGAAACTGGA
ggtttaaagggatattttacttttccattaacaatcaattgttcaaatctttcagAGAGGTGATTCAAAACATGAAGCAATGAGCAACGAGTGGTTAGAAACTGGAAACTGCCCAATTGCCAAGTCATACCGGGCTGTGAGCCATGTCATCCCAA
cattaac putative branch site (score: 2)
tctttc putative PPT
atattttactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actgaatgccaaaattttatgaagaaatttaggcactctcttcatggtttaaagggatattttacttttccattaacaatcaattgttcaaatctttcagAGAGGTGATTCAAAACATGAAGCAATGAGCAACGAGTGGTTAGAAACTGGAAACTGCCCAATTGCCAAGTCATACCGGGCTGTGAGCCATGTCATCCCAA
- -gaatgcc
- - - - - - - - - - gaagaaa
- - - - - - - - - - - - - - - - -cactctc
- - - - - - - - - - - - - - - - - - - - ttcatgg
- - - - - - - - - - - - - - - - - - - - - - - - - aaaggga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caatcaa