Sequence
atgc intronic sequence ATGC exonic sequence...cactttcctgcacatctgaggacattagcaattttctctatgtttctatgtctctccttctctatcaatcaattatctctatctatctatctcactgcagGTGCTTGAATTTTTTCATTTTGCTTGCACATCTGAGGACATCAACAACCTTGCCCATGCATTGATGCTGAAGGAAGCAATGAACACGGTCATATTTCCTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g03330.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA14G06780.1 (Glycine max), 3'ss of exon 2
-------cactttcctgcacatctgaggacattagcaattttctctatgtttctatgtctctccttctctatcaatcaattatctctatctatctatctcactgcagGTGCTTGAATTTTTTCATTTTGCTTGCACATCTGAGGACATCAACAACCTTGCCCATGCATTGATGCTGAAGGAAGCAATGAACACGGTCATATTTCCTG
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gtcgggattcacttttgtgtttctttgtactctgaggctgtgcactgctttactgttttgattaagggttct-gatggattgtgttattctaa--accttttcgcagGTGCTTGAGTTTTTCCACTTTGCTTGCACATCTGAGGATATAAATAATCTTGCCCATGCCTTGATGCTGAAGGAAACAATGAATTCTGTCATGTTTCCTG
upper sequence: Vv13s0019g03330.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA02G42130.1 (Glycine max), 3'ss of exon 2
---------cacttt-cctgcacatctgaggacattagcaattttctctatgtttctatgtctctcct-tctctatcaatcaattatctctatctatctatctcactgcagGTGCTTGAATTTTTTCATTTTGCTTGCACATCTGAGGACATCAACAACCTTGCCCATGCATTGATGCTGAAGGAAGCAATGAACACGGTCATATTTCCTG
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gttgaaattcactttatgtgtgtgtttctttatactctgaggctatgcactgttttgctgttttgattatgggttctgatggactgtgttattctaaa-acctgttcgcagGTGGTTGAGTTTTTTCACTTTGCTTGCACATCTGAGGATATAAATAATCTTGCCCATGCCTTGATGCTGAGGGAAACAATGAATTCTATCATGTTTCCTG
upper sequence: Vv13s0019g03330.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA20G28590.1 (Glycine max), 3'ss of exon 4
---------cactttcctgcacatctgaggacattagcaattttctctatgtttctatgtctctccttctctatcaatcaattatctctatctatctatctcactgcagGTGCTTGAATTTTTTCATTTTGCTTGCACATCTGAGGACATCAACAACCTTGCCCATGCATTGATGCTGAAGGAAGCAATGAACACGGTCATATTTCCTG
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gttgggattcacttttatgtgtttctttgtgctatgcggttgtacactgt-tttctgttttaatcatgagttct-gatggattgtgttattctaaa-acctttttgtagGTGCTTGAGTTTTTCCACTTTGCTTGCACATCTGAGGATATAAATAATCTTGCACATGCCTTGATGCTGAAGGAAACAATGAATTCTGTCATGTTTCCTG
upper sequence: Vv13s0019g03330.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G39300.1 (Glycine max), 3'ss of exon 3
-cactttcc-tgcacatctgaggacattagcaattttctctatgtttctatgtctctccttctctatcaatcaattatctctatctatctatctcactgcagGTGCTTGAATTTTTTCATTTTGCTTGCACATCTGAGGACATCAACAACCTTGCCCATGCATTGATGCTGAAGGAAGCAATGAACACGGTCATATTTCCTG
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tcactttatatgtgtttctttgtactatgaggcggtacactgt-tttctgttttgatcatgagttct-gatggattatgttattctaaaaccctttttgtagGTGCTTGAGTTTTTCCACTTTGCTTGCACATCTGAGGATATAAATAATCTTGCACATGCCTTGATGCTGAAGGAAACAATGAATTCTGTCATGGATAAAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctatgtctctccttctctatcaatcaattatctctatctatctatctcactgcagGTGCTTGAATTTTTTCATTTTGCTTGCACATCTGAGGACATCAACAACCTTGCCCATGCATTGATGCTGAAGGAAGCAATGAACACGGTCATATTTCCTG
atctcac putative branch site (score: 3)
tctatctc CT-rich tract
tatcaatcaattat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cactttcctgcacatctgaggacattagcaattttctctatgtttctatgtctctccttctctatcaatcaattatctctatctatctatctcactgcagGTGCTTGAATTTTTTCATTTTGCTTGCACATCTGAGGACATCAACAACCTTGCCCATGCATTGATGCTGAAGGAAGCAATGAACACGGTCATATTTCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - -tcctgca
- - - - - - - - - - - - - - - - - -ctctatg