1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gaagtttagtgaagagcagaatagttccatttgaaacatagacatcacaaaagcaaaatataaatgaaaatttctgtttgcttcatctcattttcattagGATCTACTTGGAGGATCTGTTGGCATTGGGAGTGGAAAATGGAAAATCTGAGCTACATCCTTGCAAGTACAGAGTTGTTCGGACTGATCAGACTTACTGT
species | Vitis vinifera |
transcript | Vv13s0019g01490.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATCATGGACAAGGACACCTTCTCTGCTGATGACTTCCTTGGCCAAGCCTC GATCTACTTGGAGGATCTGTTGGCATTGGGAGTGGAAAATGGAAAATCTGAEST: gi|37186622|gb|CF605975.1|CF605975
genomic: ATCATGGACAAGGACACCTTCTCTGCTGATGACTTCCTTGGCCAAGCCTCgtaagacact ... ttttcattagGATCTACTTGGAGGATCTGTTGGCATTGGGAGTGGAAAATGGAAAATCTGA
EST: ATCATGGACAAGGACACCTTCTCTGCTGATGACTTCCTTGGCCAAGCCTC GATCTACTTGGAGGATCTGTTGGCATTGGGAGTGGAAAATGGAAAAGCTGAEST: gi|110690874|gb|EE068328.1|EE068328
genomic: ATCATGGACAAGGACACCTTCTCTGCTGATGACTTCCTTGGCCAAGCCTCgtaagacact ... ttttcattagGATCTACTTGGAGGATCTGTTGGCATTGGGAGTGGAAAATGGAAAATCTGA
EST: ATCATGGACAAGGACACCTTCTCTGCTGATGACTTCCTTGGCCAAGCCTC GATCTACTTGGAGGATCTGTTGGCATTGGGAGTGGAAAATGGAAAAGCTGA
genomic: ATCATGGACAAGGACACCTTCTCTGCTGATGACTTCCTTGGCCAAGCCTCgtaagacact ... ttttcattagGATCTACTTGGAGGATCTGTTGGCATTGGGAGTGGAAAATGGAAAATCTGA
cacaaaagcaaaatataaatgaaaatttctgtttgcttcatctcattttcattagGATCTACTTGGAGGATCTGTTGGCATTGGGAGTGGAAAATGGAAAATCTGAGCTACATCCTTGCAAGTACAGAGTTGTTCGGACTGATCAGACTTACTGT
cttcatctcattttc CT-rich tract
aaaatataaatgaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaagtttagtgaagagcagaatagttccatttgaaacatagacatcacaaaagcaaaatataaatgaaaatttctgtttgcttcatctcattttcattagGATCTACTTGGAGGATCTGTTGGCATTGGGAGTGGAAAATGGAAAATCTGAGCTACATCCTTGCAAGTACAGAGTTGTTCGGACTGATCAGACTTACTGT
- - - - - gaagagca
- - - - - - - - - - - - ttccatt
- - - - - - - - - - - - - - - - gaaacat
- - - - - - - - - - - - - - - - - - - - - catcaca
- - - - - - - - - - - - - - - - - - - - - - - - -aaagcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatgaa