1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gcaactacaactgatcctcaatgtcagataaatttcacttcagtccctcactttatcataaattgcttcctccattgattctctcctttcttcctctcagGCTGAAATATCGCTTTGTCGCGTGTATAAGAGAGCTGGGGTTGAAGACCACCCTTCACTCCCTCGTTCTCTTCCGTCCAGGCCATCATCATCGAGAGGAT
species | Vitis vinifera |
transcript | Vv12s0035g02020.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCATGAACGAGTACCGCTTGCCCCAACAGGAAACCGAGCGCAGCCAAAAG GCTGAAATATCGCTTTGTCGCGTGTATAEST: gi|110386083|gb|EC950656.1|EC950656
genomic: TCATGAACGAGTACCGCTTGCCCCAACAGGAAACCGAGCGCAGCCAAAAGgtaaattata ... ttcctctcagGCTGAAATATCGCTTTGTCGCGTGTATA
EST: TCATGAACGAGTACCGCTTGCCCCAACAGGAAACCGAGCGCAGCCAAAAG GCTGAAATATCGCTTTGTCGCGTGTATAAGAGAGCTGGGGTTGAAGACCACEST: gi|349823684|gb|FQ415094.1|FQ415094
genomic: TCATGAACGAGTACCGCTTGCCCCAACAGGAAACCGAGCGCAGCCAAAAGgtaaattata ... ttcctctcagGCTGAAATATCGCTTTGTCGCGTGTATAAGAGAGCTGGGGTTGAAGACCAC
EST: TCATGAACGAGTACCGCTTGCCCCAACAGGAAACCGAGCGCAGCCAAAAG GCTGAAATATCGCTTTGTCGCGTGTATAAGAGAGCTGGGGTTGAAGACCAC
genomic: TCATGAACGAGTACCGCTTGCCCCAACAGGAAACCGAGCGCAGCCAAAAGgtaaattata ... ttcctctcagGCTGAAATATCGCTTTGTCGCGTGTATAAGAGAGCTGGGGTTGAAGACCAC
cctcactttatcataaattgcttcctccattgattctctcctttcttcctctcagGCTGAAATATCGCTTTGTCGCGTGTATAAGAGAGCTGGGGTTGAAGACCACCCTTCACTCCCTCGTTCTCTTCCGTCCAGGCCATCATCATCGAGAGGAT
ttgcttcctccattga CT-rich tract
tttatcataaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaactacaactgatcctcaatgtcagataaatttcacttcagtccctcactttatcataaattgcttcctccattgattctctcctttcttcctctcagGCTGAAATATCGCTTTGTCGCGTGTATAAGAGAGCTGGGGTTGAAGACCACCCTTCACTCCCTCGTTCTCTTCCGTCCAGGCCATCATCATCGAGAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
-caactac
- - - - - ctgatcc
- - - - - - - - - caatgtc
- - - - - - - - - - - - -agataaa
- - - - - - - - - - - - - - - - - -cacttca
- - - - - - - - - - - - - - - - - - - - - - ccctcac