1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtagttttccatcaccaatatttgggattcaaagactttaggtttcacatttataaatgcaagttaccaattatttggcactgacatatcctatatggaatggatttgtagATTAGAAAAATGAAGGGCCTGAAGCAGAAAAAGGCTCACCTTATGGAGATTCAGGTGAATGGTGGAGATGTTGCTAAGAAGGTTGACTATGCCTATGGTT
species | Vitis vinifera |
transcript | Vv12s0035g01020.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGAAAATGAAGAAGTACTGCAATGTGATTCGTGTTTTGGCCCATACCCAG ATTAGAAAAATGAAGGGCCTGAAGCAGAAAAAGGCTCACCTTATGGAGATTEST: gi|352791519|gb|FQ481098.1|FQ481098
genomic: AGAAAATGAAGAAGTACTGCAATGTGATTCGTGTTTTGGCCCATACCCAGgtagttttcc ... ggatttgtagATTAGAAAAATGAAGGGCCTGAAGCAGAAAAAGGCTCACCTTATGGAGATT
EST: AGAAAATGAAGAAGTACTGCAATGTGATTCGTGTTTTGGCCCATACCCAG ATTAGAAAAATGAAGGGCCTGAAGCAGAAAAAGGCTCACCTTATGGAGATTEST: gi|349809727|gb|FQ398352.1|FQ398352
genomic: AGAAAATGAAGAAGTACTGCAATGTGATTCGTGTTTTGGCCCATACCCAGgtagttttcc ... ggatttgtagATTAGAAAAATGAAGGGCCTGAAGCAGAAAAAGGCTCACCTTATGGAGATT
EST: AGAAAATGAAGAAGTACTGCAATGTGATTCGTGTTTTGGCCCATACCCAG ATTAGAAAAATGAAGGGCCTGAAGCAGAAAAAGGCTCACCTTATGGAGATTEST: gi|351045493|gb|FQ440678.1|FQ440678
genomic: AGAAAATGAAGAAGTACTGCAATGTGATTCGTGTTTTGGCCCATACCCAGgtagttttcc ... ggatttgtagATTAGAAAAATGAAGGGCCTGAAGCAGAAAAAGGCTCACCTTATGGAGATT
EST: AGAAAATGAAGAAGTACTGCAATGTGATTCGTGTTTTGGCCCATACCCAG ATTAGAAAAATGAAGGGCCTGAAGCAGAAAAAGGCTCACCTTATGGAGATTEST: gi|351055977|gb|FQ453438.1|FQ453438
genomic: AGAAAATGAAGAAGTACTGCAATGTGATTCGTGTTTTGGCCCATACCCAGgtagttttcc ... ggatttgtagATTAGAAAAATGAAGGGCCTGAAGCAGAAAAAGGCTCACCTTATGGAGATT
EST: AGAAAATGAAGAAGTACTGCAATGTGATTCGTGTTTTGGCCCATACCCAG ATTAGAAAAATGAAGGGCCTGAAGCAGAAAAAGGCTCACCTTATGGAGATTEST: gi|351033284|gb|FQ446516.1|FQ446516
genomic: AGAAAATGAAGAAGTACTGCAATGTGATTCGTGTTTTGGCCCATACCCAGgtagttttcc ... ggatttgtagATTAGAAAAATGAAGGGCCTGAAGCAGAAAAAGGCTCACCTTATGGAGATT
EST: AGAAAATGAAGAAGTACTGCAATGTGATTCGTGTTTTGGCCCATACCCAG ATTAGAAAAATGAAGGGCCTGAAGCAGAAAAAGGCTCACCTTATGGAGATTEST: gi|351048267|gb|FQ442237.1|FQ442237
genomic: AGAAAATGAAGAAGTACTGCAATGTGATTCGTGTTTTGGCCCATACCCAGgtagttttcc ... ggatttgtagATTAGAAAAATGAAGGGCCTGAAGCAGAAAAAGGCTCACCTTATGGAGATT
EST: AGAAAATGAAGAAGTACTGCAATGTGATTCGTGTTTTGGCCCATACCCAG ATTAGAAAAATGAAGGGCCCGAAGCAGAAAAAGGCTCACCTTATGGAGATTEST: gi|351026538|gb|FQ432436.1|FQ432436
genomic: AGAAAATGAAGAAGTACTGCAATGTGATTCGTGTTTTGGCCCATACCCAGgtagttttcc ... ggatttgtagATTAGAAAAATGAAGGGCCTGAAGCAGAAAAAGGCTCACCTTATGGAGATT
EST: AGAAAATGAAGAAGTACTGCAATGTGATTCGTGTTTTGGCCCATACCCAG ATTAGAAAAATGAAGGGCCTGAAGCAGAAAAAGGCTCACCTTATGGAGATTEST: gi|161714899|gb|FC064521.1|FC064521
genomic: AGAAAATGAAGAAGTACTGCAATGTGATTCGTGTTTTGGCCCATACCCAGgtagttttcc ... ggatttgtagATTAGAAAAATGAAGGGCCTGAAGCAGAAAAAGGCTCACCTTATGGAGATT
EST: AGAAAATGAAGAAGTACTGCAATGTGATTCGTGTTTTGGCCCATACCCAG ATTAGAAAAATGAAGGGCCTGAAGCAGAAAAAGGCTCACCTTATGGAGATTEST: gi|349812497|gb|FQ407116.1|FQ407116
genomic: AGAAAATGAAGAAGTACTGCAATGTGATTCGTGTTTTGGCCCATACCCAGgtagttttcc ... ggatttgtagATTAGAAAAATGAAGGGCCTGAAGCAGAAAAAGGCTCACCTTATGGAGATT
EST: AGAAAATGAAGAAGTACTGCAATGTGATTCGTGTTTTGGCCCATACCCAG ATTAGAAAAATGAAGGGCCTGAAGCAGAAAAAGGCTCACCTTATGGAGATTEST: gi|351045744|gb|FQ440929.1|FQ440929
genomic: AGAAAATGAAGAAGTACTGCAATGTGATTCGTGTTTTGGCCCATACCCAGgtagttttcc ... ggatttgtagATTAGAAAAATGAAGGGCCTGAAGCAGAAAAAGGCTCACCTTATGGAGATT
EST: AGAAAATGAAGAAGTACTGCAATGTGATTCGTGTTTTGGCCCATACCCAG ATTAGAAAAATGAAGGGCCTGAAGCAGAAAAAGGCTCACCTTATGGAGATTEST: gi|110687580|gb|EE065148.1|EE065148
genomic: AGAAAATGAAGAAGTACTGCAATGTGATTCGTGTTTTGGCCCATACCCAGgtagttttcc ... ggatttgtagATTAGAAAAATGAAGGGCCTGAAGCAGAAAAAGGCTCACCTTATGGAGATT
EST: TTCGTGTTTTGGCCCATACCCAG ATTAGAAAAATGAAGGGCCTGAAGCAGAAAAAGGCTCACCTTATGGAGATTEST: gi|349810715|gb|FQ402958.1|FQ402958
genomic: TTCGTGTTTTGGCCCATACCCAGgtagttttcc ... ggatttgtagATTAGAAAAATGAAGGGCCTGAAGCAGAAAAAGGCTCACCTTATGGAGATT
EST: AGAAAATGAAGAAGTACTGCAATGTGATTCGTGTTTTGGCCCATACCCAG ATTAGAAAAATGAAGGGCCTGAAGCAGAAAAAGGCTCACCTTATGGAGATTEST: gi|351027369|gb|FQ444618.1|FQ444618
genomic: AGAAAATGAAGAAGTACTGCAATGTGATTCGTGTTTTGGCCCATACCCAGgtagttttcc ... ggatttgtagATTAGAAAAATGAAGGGCCTGAAGCAGAAAAAGGCTCACCTTATGGAGATT
EST: AGAAAATGAAGAAGTACTGCAATGTGATTCGTGTTTTGGCCCATACCCAG ATTAGAAAAATGAAGGGCCTGAAGCAGAAAAAGGCTCACCTTATGGAGATTEST: gi|351048851|gb|FQ449719.1|FQ449719
genomic: AGAAAATGAAGAAGTACTGCAATGTGATTCGTGTTTTGGCCCATACCCAGgtagttttcc ... ggatttgtagATTAGAAAAATGAAGGGCCTGAAGCAGAAAAAGGCTCACCTTATGGAGATT
EST: AGAAAATGAAGAAGTACTGCAATGTGATTCGTGTTTTGGCCCATACCCAG ATTAGAAAAATGAAGGGCCTGAAGCAGAAAAAGGCTCACCTTATGGAGATTEST: gi|352795550|gb|FQ480138.1|FQ480138
genomic: AGAAAATGAAGAAGTACTGCAATGTGATTCGTGTTTTGGCCCATACCCAGgtagttttcc ... ggatttgtagATTAGAAAAATGAAGGGCCTGAAGCAGAAAAAGGCTCACCTTATGGAGATT
EST: AGAAAATGAAGAAGTACTGCAATGTGATTCGTGTTTTGGCCCATACCCAG ATTAGAAAAATGAAGGGCCTGAAGCAGAAAAAGGCTCACCTTATGGAGATT
genomic: AGAAAATGAAGAAGTACTGCAATGTGATTCGTGTTTTGGCCCATACCCAGgtagttttcc ... ggatttgtagATTAGAAAAATGAAGGGCCTGAAGCAGAAAAAGGCTCACCTTATGGAGATT
atgcaagttaccaattatttggcactgacatatcctatatggaatggatttgtagATTAGAAAAATGAAGGGCCTGAAGCAGAAAAAGGCTCACCTTATGGAGATTCAGGTGAATGGTGGAGATGTTGCTAAGAAGGTTGACTATGCCTATGGTT
cactgac putative branch site (score: 2)
aattattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagttttccatcaccaatatttgggattcaaagactttaggtttcacatttataaatgcaagttaccaattatttggcactgacatatcctatatggaatggatttgtagATTAGAAAAATGAAGGGCCTGAAGCAGAAAAAGGCTCACCTTATGGAGATTCAGGTGAATGGTGGAGATGTTGCTAAGAAGGTTGACTATGCCTATGGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG